Protein Info for LRK54_RS14675 in Rhodanobacter denitrificans FW104-10B01

Annotation: YajQ family cyclic di-GMP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 160 PF04461: DUF520" amino acids 2 to 159 (158 residues), 199.9 bits, see alignment E=1.6e-63

Best Hits

Swiss-Prot: 75% identical to Y3698_BORPD: UPF0234 protein Bpet3698 (Bpet3698) from Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448)

KEGG orthology group: K09767, hypothetical protein (inferred from 79% identity to put:PT7_0955)

Predicted SEED Role

"FIG001943: hypothetical protein YajQ"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (160 amino acids)

>LRK54_RS14675 YajQ family cyclic di-GMP-binding protein (Rhodanobacter denitrificans FW104-10B01)
MPSFDVISEVDKHELTNAIDQANRELTTRFDFKGVDAQYVLDDGVITQNAPSEFQLQQML
DILRGRLTARKIDIRALDVGDPETNLGGSRQKITVKQGIEQPVAKKLVAELKAAKLKVEA
QINGDKLRISGKKRDDLQAAMAVLRKSEVELPLQFDNFRD