Protein Info for LRK54_RS14195 in Rhodanobacter denitrificans FW104-10B01

Annotation: ATP-binding cassette domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

• PF00005: ABC_tran
  • amino acids 34 to 176 (143 residues), 98.6 bits, E=1.5e-31
  • amino acids 356 to 499 (144 residues), 100.5 bits, E=3.8e-32

Best Hits

KEGG orthology group: None (inferred from 90% identity to adk:Alide2_1725)

Predicted SEED Role

"ABC transporter multidrug efflux pump, fused ATP-binding domains"

Protein Sequence (589 amino acids)

>LRK54_RS14195 ATP-binding cassette domain-containing protein (Rhodanobacter denitrificans FW104-10B01)
MGPQPARVASQPGKHDAAVVIDGVGKRFGEVQALRGLSATIRYGRLTGLVGPDGAGKTTL
MRIMTGLLVPDAGSVSLAGFDVVKDNDAIHVASGYMPQRFGLYEDLSVMENMRLYARLRG
MDADRHADLFAELLEFTRLGPFTKRLAGKLSGGMKQKLGLACALMARPKVLLLDEPGVGV
DPVSRQDLWRMVQALTDEGMAVVWSTAYLDEAERCESVLLLNQGKLLFDGPPQTLTAQLE
GRSFRLENVGAERRAVLTQALDLPSVSDGVIQGAGVRVVLREGADTEQIQSLADQARVEL
APVPARFEDAFIDLLGGGPGGTSALAEHLPPVELGSDIAVSCRNLTKRFGPFTATDSVSF
EVHKGEIFGLLGPNGAGKSTTFKMLCGLLKPTTGEAHVVGLDLRRATGAAKSRLGYMAQK
FSLYGLLSVRQNLEFSAGVYQLEGQTRRERIEEMIATFDLGDWLSATPDSLPLGHKQRLA
LACSLMHRPPVLFLDEPTSGVDPITRREFWTHINGLARKGVTIMVTTHFMDEAEYCDRVA
MLSRARLIALDTPDALKRMAITPQRPDPTMEDAFIHLVQSADRDIEAAA