Protein Info for LRK54_RS14035 in Rhodanobacter denitrificans FW104-10B01

Annotation: molybdate ABC transporter permease subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 224 transmembrane" amino acids 6 to 33 (28 residues), see Phobius details amino acids 44 to 65 (22 residues), see Phobius details amino acids 79 to 101 (23 residues), see Phobius details amino acids 145 to 168 (24 residues), see Phobius details amino acids 196 to 216 (21 residues), see Phobius details TIGR02141: molybdate ABC transporter, permease protein" amino acids 10 to 218 (209 residues), 230.9 bits, see alignment E=6e-73 PF00528: BPD_transp_1" amino acids 26 to 212 (187 residues), 63.9 bits, see alignment E=8.6e-22

Best Hits

Swiss-Prot: 63% identical to MODB_AZOVI: Molybdenum transport system permease protein ModB (modB) from Azotobacter vinelandii

KEGG orthology group: K02018, molybdate transport system permease protein (inferred from 67% identity to bpt:Bpet0725)

Predicted SEED Role

"Molybdenum transport system permease protein ModB (TC 3.A.1.8.1)" in subsystem Molybdenum cofactor biosynthesis or Transport of Molybdenum (TC 3.A.1.8.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (224 amino acids)

>LRK54_RS14035 molybdate ABC transporter permease subunit (Rhodanobacter denitrificans FW104-10B01)
MTTLQAAILVTLKLAGLTTLILLLLGMPLAWWLARSRSRWRMPVGALVALPMVLPPTVLG
FYLLLGMGPDGPLGQLTTALGLGTLAFTFQGLLLASVLYSLPFVVHPLQSGFAAIEASVL
EAAATLRASPFDRFISVVLPLSKPALVTATLFGFAHTVGEFGVVLMVGGNIDGQTRVLSV
LLYDQVEAMAYADAHRLAAGLLAFSFGMLLVVQWLGRRTALAHD