Protein Info for LRK54_RS13480 in Rhodanobacter denitrificans FW104-10B01

Annotation: PilZ domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 204 transmembrane" amino acids 122 to 142 (21 residues), see Phobius details PF16823: tPilZ" amino acids 66 to 200 (135 residues), 85.9 bits, see alignment E=1.4e-28

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (204 amino acids)

>LRK54_RS13480 PilZ domain-containing protein (Rhodanobacter denitrificans FW104-10B01)
MTSDSTSPGKTTSGITASGGAAVAGWDDFEQRVSCEESLHADGEPLAWPPSPALLQQLAE
RNANVLAAIAALEERRADSGEDDSPLMQEILRMDAKLNVLVEIVNSLLVPDSVLPPRQLL
RFNAIGALLPAGLAPAGGGLLLRIRFDLCRSLPLELAAQVQRQFDDGRVFVIFAPLGEAL
SDAIERLVFRHHRRKVAGARQPVA