Protein Info for LRK54_RS13220 in Rhodanobacter denitrificans FW104-10B01

Annotation: lipopolysaccharide biosynthesis protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 459 transmembrane" amino acids 6 to 28 (23 residues), see Phobius details amino acids 51 to 76 (26 residues), see Phobius details amino acids 85 to 106 (22 residues), see Phobius details amino acids 118 to 137 (20 residues), see Phobius details amino acids 143 to 163 (21 residues), see Phobius details amino acids 224 to 242 (19 residues), see Phobius details amino acids 262 to 285 (24 residues), see Phobius details amino acids 297 to 317 (21 residues), see Phobius details amino acids 339 to 366 (28 residues), see Phobius details amino acids 386 to 407 (22 residues), see Phobius details amino acids 414 to 435 (22 residues), see Phobius details PF13440: Polysacc_synt_3" amino acids 2 to 294 (293 residues), 208 bits, see alignment E=1.9e-65 PF01943: Polysacc_synt" amino acids 2 to 243 (242 residues), 96.5 bits, see alignment E=2e-31

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (459 amino acids)

>LRK54_RS13220 lipopolysaccharide biosynthesis protein (Rhodanobacter denitrificans FW104-10B01)
MIISRLLTPAEVGVFSVAAGLVALINMLRDFGVSEFVVQEPTLDEALVRTVFTINLMIAW
VLGGIIVAASGVIGTFYGDPGVTRVLKVLGFVFFLLPFGTTAMALLNRELEYGKLAKIRI
CESIIRSCTAVALAYAGFTYMSIAWASVAGISALIIGCTLWGWQYRVKGLSFMHWKRVLH
FGSNRTISDVASQLGEQSASLVIGKMLGMTDAGLFSRGYGVVNMYRTNVLGAIGAVAFPA
FAREHREHATAPDLFLKALVYTTGISWPFFSCSVILAYPVINILFGEQWDAAIPLMRWLC
FAALIGTLMFQCNRFLVALGRVRAVTCVELQYQTVRVGITIGAAFYGVAAVAASQVLVSI
IATVLYYRKMRIYEALAVRKCAKALVPSVVVTLGACAVPAAVVLWPGLAARHVLLAFELA
VVGGGAGWLLGLVVARHPLLDELKRVVSHISSRYRLLRG