Protein Info for LRK54_RS13110 in Rhodanobacter denitrificans FW104-10B01

Annotation: protein kinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 567 transmembrane" amino acids 300 to 321 (22 residues), see Phobius details amino acids 460 to 483 (24 residues), see Phobius details PF00069: Pkinase" amino acids 13 to 226 (214 residues), 142.6 bits, see alignment E=3.1e-45 PF07714: PK_Tyr_Ser-Thr" amino acids 16 to 237 (222 residues), 91 bits, see alignment E=1.6e-29 PF17203: sCache_3_2" amino acids 339 to 455 (117 residues), 34.3 bits, see alignment E=4.8e-12 PF00672: HAMP" amino acids 490 to 527 (38 residues), 32 bits, see alignment 2.6e-11

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (567 amino acids)

>LRK54_RS13110 protein kinase (Rhodanobacter denitrificans FW104-10B01)
MSEDVIPQQVGRYRIEGVLGEGAMAVVYAGFDPDIERKVAIKCLHREIAADPVYRRRFLV
EARAAGHLTHPHIVTIFDVGETDDGRSYIAMERLSGETLASAVTREGFPSLPVIIDLVGQ
LAAALDYAHARGVLHHDVKPENIMLADGWSYAKISDFGIAERRGVLRDAGGVSAEVGGTP
AYMALERLRGERTDARSDLFSLGVVLYWLLTGKLPWPDIGNPQQLVRKRLRSPRPPIRPR
DPATPSILVSIVRTLLAPAAESRYQRGAEVIEDLRLAAREYEREREDPLATRIISLRLRW
ASSLGAILSLVLVLGLAAIYAKQSAAVTGVALDFGSSMGRMIASESAENLLLGDQAATRA
LVTDVSRNRQIRYLAIADRDGGVIASTQPQEVGQRLSAPDGEKYLPRSGDIQSYLSRTAG
GREQGGMLLFDVPIHYQAKTVGDLRLGISNAALRAAQRTTLWVIAVVLVLTLAAVVGAAY
WLFRRPLNTLDLLGDALLKVARGDFRHRIRLARRDELGRLFAAFNLMNGALQARQHRSGM
AAPAAVEDVTRPTRIMSAASEEGAGES