Protein Info for LRK54_RS12930 in Rhodanobacter denitrificans FW104-10B01

Annotation: DUF2182 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 278 transmembrane" amino acids 26 to 48 (23 residues), see Phobius details amino acids 74 to 98 (25 residues), see Phobius details amino acids 121 to 143 (23 residues), see Phobius details amino acids 154 to 173 (20 residues), see Phobius details amino acids 210 to 231 (22 residues), see Phobius details amino acids 255 to 275 (21 residues), see Phobius details PF09948: DUF2182" amino acids 82 to 269 (188 residues), 142.9 bits, see alignment E=5.6e-46

Best Hits

KEGG orthology group: None (inferred from 54% identity to reh:H16_B0829)

Predicted SEED Role

"Probable transmembrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (278 amino acids)

>LRK54_RS12930 DUF2182 domain-containing protein (Rhodanobacter denitrificans FW104-10B01)
MRPLASGPADVAARAVPRRIRRGQGFLAVVTLLFLASVAATIAGGAMMSTMDGMPMPGGW
TMSMVWLQLDGRSWPAAAVSFLGMWMAMMVAMMLPSLMPVLWRCHQAFGDNGVARPGRLT
AAVATGYFTAWLVCGVAVFPLGGMLATLAMRLPLLARAVPVLAGMVVLAAGALQFSRWKA
RHLACCRGAPGFAQAVPRSAGRAWRRGLRFGLHCNLCGVGLTASLLVIGVMDLRAMGAVF
AGITLERLAPAGERMARVVGVVLVGAGAVLLAQAIGRV