Protein Info for LRK54_RS12860 in Rhodanobacter denitrificans FW104-10B01

Annotation: RNase adapter RapZ

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 301 PF03668: ATP_bind_2" amino acids 17 to 301 (285 residues), 312.4 bits, see alignment E=1.5e-97

Best Hits

Swiss-Prot: 48% identical to Y2809_CELJU: Nucleotide-binding protein CJA_2809 (CJA_2809) from Cellvibrio japonicus (strain Ueda107)

KEGG orthology group: K06958, UPF0042 nucleotide-binding protein (inferred from 55% identity to xal:XALc_2143)

Predicted SEED Role

"Hypothetical ATP-binding protein UPF0042, contains P-loop"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (301 amino acids)

>LRK54_RS12860 RNase adapter RapZ (Rhodanobacter denitrificans FW104-10B01)
MSDDTRPPGTLADPHEIHLIVLTGMSGGGKTVALRALEDLEFYCVDNLPSVLLPQLVNAA
TSGDRRGRPRRIAVGVDVRNRGTDFAHMPTVLSELAGAGVQVHLIFLDCRDDVLIKRYSE
TRRRHPLATRGVSLADAIVEERRLLRPLIAIAEKVIDSSELNVHQLRRLVATGYAQATEG
LTLMFQSFAFRRGLPLDADFVFDARCLPNPHWEPRLRPLSGKDAPVREFLDAAPLVGEYF
ADTARWLDAWLPRFEQDDRSYVTISIGCTGGRHRSVYLVEKLAAHYRSHREGVLTFHREL
E