Protein Info for LRK54_RS12715 in Rhodanobacter denitrificans FW104-10B01

Annotation: ATP-dependent RNA helicase HrpA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1356 TIGR01967: RNA helicase HrpA" amino acids 24 to 624 (601 residues), 898.1 bits, see alignment E=5.1e-274 PF00270: DEAD" amino acids 90 to 237 (148 residues), 31.9 bits, see alignment E=3.8e-11 PF00271: Helicase_C" amino acids 289 to 415 (127 residues), 44.3 bits, see alignment E=6.7e-15 PF21010: HA2_C" amino acids 505 to 561 (57 residues), 27.9 bits, see alignment (E = 1e-09) PF07717: OB_NTP_bind" amino acids 687 to 763 (77 residues), 37.3 bits, see alignment 9.2e-13 PF11898: DUF3418" amino acids 777 to 1353 (577 residues), 598 bits, see alignment E=7.6e-183

Best Hits

Predicted SEED Role

"ATP dependent RNA helicase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1356 amino acids)

>LRK54_RS12715 ATP-dependent RNA helicase HrpA (Rhodanobacter denitrificans FW104-10B01)
MNDSSPPTPDSSADPGLRDVRRQLETVSSRDFGRLLGRWRALSRRPDQGKLAALRGDIER
SAARRRARAAAKPPIQLDESLPISARGEDIVKLIREHQVVVIAGETGSGKTTQLPKLCLA
AGRGEAGMIGCTQPRRLAARSVARRVAEELGTQVGDIVGFQVRFNDQVSERSLIKFMTDG
ILLAETQGDPWLSTYDTLIIDEAHERSLNIDFLLGYLKRLAARRPDLKIIVTSATIDTAR
FAEHFDGAPVVEVEGRAYPVELRWRSLDEIAARQGRSKDMQQGSAEHIAAVLDEISRDDP
RGDVLVFLPGEREIRDAHQLLSRRQYRETEILPLYARLSAGDQDRVFKPGVKRRVVLATN
VAETSLTVPRIRYVIDTGTARVKRYSQRSQLERLHVEPVSQAAADQRKGRCGRVGPGICY
RLYDEADFAGRAAFTDPELLRSSLANVILRMLALKLGEVDAFPFLEAPDPRVVADGFRRL
SEISAIDETRQLTAIGRTLARLPIDVQLARMLVEGEQLHALRELLVIVAFLSIQDPRERP
SDARQQADAAHAVFADPKSDFVGVLNLWRAYHDAHEELTQSKLRDWCARHFLSFMRMREW
RELHRQLLLVVEELGWKLEAQIPARDEARSAPPPAGRGRLGGGKALRVAAQDQKRTPAQS
SSATEGSPRGASRGGSESDADRLYESVHRSLLAGLPTQVGRKDEKGIYQSTRERKFQVFP
GSALAKAPPNWVFSAQILDVGGRVWGMMNARVEPSWIEQQAAHLLRTHCRDPHWSRKRGG
VVAYEQVSLFGLVLVEKRPVTFQAQDPALAHAIFLREALVRGDIDTKADFVRANQRVLEE
ALGIEAKQRREGLIRHEDELVGFFESKLPQDIASSRALDAWYRKAHPAEQAALRWSLDDV
LAGGTGLDGKAFPAVLEIPPQRYKLEYRFVPGDAADGVTLQLPLAMLNALPPARCEWLVP
GLLADKVAELIRGLPKALRRNFVPAPDFARAFVEAESPRDEPLAKALAAFLKRTTGVDIT
AGEFAGVELSPHFLMRYRLHDERGQTLASGRDLAALRGQWEGQAREAFSRKTDIELTRED
VAHWDFEAIPAQVRSDSGLAAFPALVDLGETVALRVFERADEARAAHAGGVVRLLRNALA
AEAKQARRRLPIGNALALKYAPLGSVDSLREDLLEGGFADLLERHELDVRSAGAFEALRT
QCARELFGAGVERLKLAEPVVEAQAELKPWLEPPLLGFARASYDDLREQFDALLVPGFLR
DLPLARLAHYPRYLKAMRLRGERLRQDPAKDQQRLLQVLPYWRAYLQQRAVGTDPAALAE
LRWLIEEWRVSLFAQELKTAEPVSPKRLAKALAALG