Protein Info for LRK54_RS12670 in Rhodanobacter denitrificans FW104-10B01

Annotation: glycosyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 873 transmembrane" amino acids 12 to 34 (23 residues), see Phobius details amino acids 328 to 347 (20 residues), see Phobius details amino acids 359 to 380 (22 residues), see Phobius details amino acids 390 to 411 (22 residues), see Phobius details amino acids 698 to 722 (25 residues), see Phobius details amino acids 733 to 753 (21 residues), see Phobius details amino acids 764 to 783 (20 residues), see Phobius details amino acids 817 to 835 (19 residues), see Phobius details amino acids 843 to 865 (23 residues), see Phobius details PF00332: Glyco_hydro_17" amino acids 225 to 317 (93 residues), 39 bits, see alignment E=2e-13 PF13641: Glyco_tranf_2_3" amino acids 440 to 667 (228 residues), 75.8 bits, see alignment E=1.2e-24 PF00535: Glycos_transf_2" amino acids 441 to 611 (171 residues), 85.4 bits, see alignment E=1.1e-27 PF13506: Glyco_transf_21" amino acids 524 to 665 (142 residues), 32.1 bits, see alignment E=2.1e-11 PF13632: Glyco_trans_2_3" amino acids 528 to 731 (204 residues), 90.1 bits, see alignment E=4.6e-29

Best Hits

KEGG orthology group: None (inferred from 53% identity to azo:azo1282)

Predicted SEED Role

"probable glucosyl transferase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (873 amino acids)

>LRK54_RS12670 glycosyltransferase (Rhodanobacter denitrificans FW104-10B01)
MSATAANHNSRYPLLTAIVLALIVAAMNIGLWWWGNYPRGPEDWHGKVGGYALSVFQRYQ
SPFKLDYPSDEEIAADLKLLHRYTDHIRTYTMQQNPQLYRLAQKEGLKVMAGAEIDKRLD
NNERELDLLIAKARAYPDTVTRVIVGNEVLFRNDLAPEQMMAYLDRVRAAVHQPVSIAEP
DYIWLKYPELAEHVDFITIHLFPFWNGVPVSGPSGNPHPALDQALGAYQQIRQRYPDKPV
MVGEIGWPSNGDRHEYADPSVSNEAIFIRDWMNAAKAAHIDYYLLEAFDQPWKENLGEGR
TGAYWGMFNADRQLKFPLTGPVVEDTSWPWKAIAASLLALLPMIFFARRFSRFKLMGRFF
FAALIQLACGLIVWSATLPFNFYLSWVDWTMLTLLFPAQIAILAILLINGFEFTEVLWRR
DWIRHAGMLTPDPPEKQPFVSIHLACYNEPPEMVIVTLDSLAALDYANFEVLVIDNNTKD
PAVWQPVQEYCEKLGKRFRFFHLAPWPGFKAGALNFGLKETDPQADVVAVIDADYEVRAD
WLATLTGHFHDPRVAVVQCPQAHREFEHNRFRRMTAWEYDGFFRIGMHHRNERNAIIQHG
TMTMVRRSALEGTGGWSEWTICEDAELGLRLMHAGYELVYVDELMGKGLTPADFKAYKSQ
RYRWAFGAMQILKGRWRWMTQKGPLSAGQRFHFLTGWFSWFADALHLIFTLMALFWTAGM
VAFPQYFSLPMQLFLIPVIGFFFAKAIFGIVLYRARVPCGWYDTLMASLASMGLSHAIAR
GILHGLTREKTSFVVTAKSRRLGGSNFAAFAPVREELLMAVALMLCIVGMALGYGTRYIE
GTLWMFILAAQSIPYVSAVIGAWIAHKSGDKAG