Protein Info for LRK54_RS12665 in Rhodanobacter denitrificans FW104-10B01

Annotation: autotransporter assembly complex protein TamA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 590 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF17243: POTRA_TamA_1" amino acids 27 to 103 (77 residues), 57.8 bits, see alignment E=1.4e-19 PF07244: POTRA" amino acids 193 to 262 (70 residues), 25.6 bits, see alignment E=2.5e-09 PF01103: Omp85" amino acids 298 to 580 (283 residues), 122.4 bits, see alignment E=4.8e-39

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (590 amino acids)

>LRK54_RS12665 autotransporter assembly complex protein TamA (Rhodanobacter denitrificans FW104-10B01)
MRRPRRRPSFLLPLLLLASQAHAGVQLVVDGVADPLKAAVIAGVELSQYAGRDVSDAQAK
RLYERAPGQVKSALQPYGYYDASVTGELQPIGRDWRVTLHVQPGEPVKVTAVDVQLDPEA
AALAPIRQAKRALERLKDKPLNHGAYDAARDALGAQLTASGFLDARLLTHRVEVTRANHS
AAIKLAWQAGPRYRYGRLHFDGSQFEDGFLDRYVPFKSGDYFSQSQLLELQQALNGADYF
AVVNVLPDVDAAKGGVVDVTVQLAPAKRTIYTGGPFIGTDTGFGVRGGMERRWVNRRGHK
WKNELVVAQKLKTLSTLYSIPLPGDNQRSYNVGANFRDANTATSQSRTLELVGNETRQWH
GWTRSLGVHALSGTFTVGKRGSEPDNAPGIEHGRSTLVFGEAALTRKQADNPDFVRRGWL
LSVAARSTAGNLLSDASFSQVTADAKWIRALGTRSRNRLILRGGAGMTWTNDFTALPPQL
RFFAGGDRSVRGYGYQSIGPRNSTDRVIGGRHLLVASTELEHYFTRNWGMAAFVDAGNAF
SGTDYRPKLGAGLGLRWRSPVGMIRVDLGTPIHDDRAHGIQLHLVIGPDL