Protein Info for LRK54_RS11700 in Rhodanobacter denitrificans FW104-10B01

Annotation: cytochrome bd-I oxidase subunit CydX

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 46 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details TIGR02106: cyd operon protein YbgT" amino acids 1 to 26 (26 residues), 65.2 bits, see alignment E=2.4e-22 PF08173: YbgT_YccB" amino acids 1 to 26 (26 residues), 58.3 bits, see alignment E=3.2e-20

Best Hits

Swiss-Prot: 58% identical to CYDX_BRUA2: Cytochrome bd ubiquinol oxidase subunit X (cydX) from Brucella abortus (strain 2308)

KEGG orthology group: None (inferred from 65% identity to bav:BAV3109)

Predicted SEED Role

"Cyd operon protein YbgT"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (46 amino acids)

>LRK54_RS11700 cytochrome bd-I oxidase subunit CydX (Rhodanobacter denitrificans FW104-10B01)
MWYFSWILGLGLACAFAILNAMWYEVHATDEANRLREDSELSDALT