Protein Info for LRK54_RS11610 in Rhodanobacter denitrificans FW104-10B01

Annotation: serine/threonine-protein kinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1099 transmembrane" amino acids 298 to 318 (21 residues), see Phobius details PF00069: Pkinase" amino acids 28 to 274 (247 residues), 159.7 bits, see alignment E=3e-50 PF07714: PK_Tyr_Ser-Thr" amino acids 28 to 272 (245 residues), 103 bits, see alignment E=5.3e-33 PF13424: TPR_12" amino acids 651 to 721 (71 residues), 36.1 bits, see alignment 1.8e-12 amino acids 731 to 797 (67 residues), 40.1 bits, see alignment 1e-13 PF13374: TPR_10" amino acids 691 to 723 (33 residues), 14.7 bits, see alignment (E = 7.6e-06)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1099 amino acids)

>LRK54_RS11610 serine/threonine-protein kinase (Rhodanobacter denitrificans FW104-10B01)
MTSQPTATGIYAHMNLAPGTMLAGRFRIEALLGAGGMGVVYRAHDTALDVPVALKLLRPE
LAVRSDSFERFRQELLLARQVSSPHVVRIHDLAQHDGHWLISMDYVDGEGLDQRIDRGAM
PLEDALRIARQIALGLQAAHARMVVHRDLKPANVLVDREGNAYISDFGVARSLASSGLTL
AGTGAVIGTPDYLSPEQARGDPVDTRSDLYALGLIMHEMLTGAPAFQGATAAEAIVQRLV
RTPSPVTRERPDVPAWVARLIERLLRPRPAHRLPDAAAVIQAIDRRAMPRDLRAHRRAWL
ATVALLASIGITGTLWWMPHDKTTGNDASPPLHRVLVLPLRGAALPVPRVIALDAYLRAT
LFALPGVASVDTDRTFQALRQLDAAGSTPDPAALRRLAAADRTLSPDLRQRNGHWYVHAE
LRKDDAATQTLDGPPAADAATALHAWLAQPALAKALGAPAPAPELKLPAEVATLDAFGAV
LQVRENDNIPAALADLRAITRRERNDPVLWHAQLRLAQAVGERDVALDAIEQGQRAANAA
PVRLQRVFAAERALYDGDVPAAIAQWRAQLAETPDDTLTDLQLARAQGGGGDFRAAMARL
SQLTARDGDDPRAWFELGKFSIMQGEARRAVDDYLVRALVLYKRGRNPYGVAETTNALGI
GYGRLGQTANAEEQYRKAATLQRDVGNRRGVATSLRNLANVLSLRGAFDEAGNALAQARA
LTVELDDREGLAAVDNELGVLAEERGDYLGALEAYRRALQGWQQVGDAHGLAQALNDIGF
ANFQLGRYDDAQSYWQRTAESEAGLGDTGRIRTGQNLGLLAAARGHWQEARKLQEGALAE
AERQQMPEEAAVSRRNLAKLALMQGDVADSLAQADKAIALFSQRSDRRGEADTRLLRVQA
LLAAGAEATARRELKPLESADPGTSVEQRAGVEIVRAQLALHAGDLESTVAALDNAQPLA
KASGVRELQLRVALLRAHIDPRADTGLDSATAMLGNAELRLDWLTLAMKHALAAHDATAA
RRAYREAISLMHGSEVLGAPQIYTLGASAQRLAGDAAGAAAAEQAAAAAQAAFRAKLPTQ
LRDAGSSSPVRRVGADTTP