Protein Info for LRK54_RS11490 in Rhodanobacter denitrificans FW104-10B01

Annotation: TonB-dependent receptor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 998 signal peptide" amino acids 1 to 31 (31 residues), see Phobius details PF13620: CarboxypepD_reg" amino acids 38 to 107 (70 residues), 48.7 bits, see alignment 1.2e-16 PF07715: Plug" amino acids 132 to 230 (99 residues), 31.7 bits, see alignment E=2.8e-11 PF00593: TonB_dep_Rec" amino acids 321 to 953 (633 residues), 32.1 bits, see alignment E=1.8e-11

Best Hits

Predicted SEED Role

"Oar protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (998 amino acids)

>LRK54_RS11490 TonB-dependent receptor (Rhodanobacter denitrificans FW104-10B01)
MSNTRTLRRTVLGTALGLALAAFGGPQAYAANNDGSVAGRTQAGATVVVTNPATGLTRTI
TADNDGNYRFPFLPVGQYTISASSGGQPVGPARNVTVALGTTTTVDLGAANATSLATINV
TGSVLPVIDVRSTESATIVSRADLVRLPVDQNVTSVALLAPGVVKGNAAFGGISFGGSSI
AENAFYVNGLNVTDFYNRNGFSEAPFAFYDQFQVKTGGYSVEFGRTTGGVVNAVARSGTN
EFKGGVEITLEPGNWHSRADDHYDASGHRYLTASRDQDSLVKTNIWASGPIVKDKLFIFA
MYEARGSSPRNTNNAGTTLTSNNSDTGFWGTTIDWNITDSNVLQLMAFSDKNKNTGDVYS
YDYDTSTIGTRTNKVFTDTGGKNWALTWTSYLTNDLSMKLMYGRNEREAFTRSQLDIDCN
YVSANNAFRAIHDPGVQLGCTSSSTVYKRNDTRKQARADFEWTLGDHLLRFGYDHENDTS
DYNRHYAGPGAYYYNLYAASAGSTISNGGVVPAGYDAYVRARRYEIAGTFTTKNAAYYIE
DNWQVTPSLVLNAGVRNDSFDNQDAAGRSYIKMSRQIAPRLGFSWDMKGDGSTKLFGNLG
RYYLPVANVINIKQAGGLLDERTYYAFDGWEYKTLNGVEYAVPKLGPQIGPVDNSQGDGT
VGDLRSEVDKNMDPVYQDEAILGFQQLITSQWSWGVSATYRRLHNAIDDMEISATTQCGE
NGYIGWVMANPGKKVTVWGDTNCDGTPDGYLTVDTSKEGWAMYDAQGNYLGQRGWVKPKR
TYAAVELQLNRAWDEKWAMNASYTMSWNRGNAEGPVNSDTDFDDTGRTENFDDPWVNLGG
DGYLPNDRRHQFKLRGTYALTPHWQLGADVNAASGGPITGFGVGNPYDATNYHSYFICVQ
NCASPVSENRVYERSPRGKYGRLPWTFTLNAGISYIQPFDGGEFRVKLAVYNLLNQKHTT
AVDQDLQTSISNSTSDTFRQPLGFQSPRFTQLTMSVNF