Protein Info for LRK54_RS11340 in Rhodanobacter denitrificans FW104-10B01

Annotation: UPF0104 family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 315 transmembrane" amino acids 15 to 35 (21 residues), see Phobius details amino acids 55 to 80 (26 residues), see Phobius details amino acids 92 to 112 (21 residues), see Phobius details amino acids 132 to 156 (25 residues), see Phobius details amino acids 168 to 185 (18 residues), see Phobius details amino acids 205 to 227 (23 residues), see Phobius details amino acids 239 to 261 (23 residues), see Phobius details amino acids 278 to 303 (26 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (315 amino acids)

>LRK54_RS11340 UPF0104 family protein (Rhodanobacter denitrificans FW104-10B01)
MADPHAPAGSSARWLRLLSWSGSLAAFALALWLLHRYLTHLSWHDVAAAWSQLPGWRIAC
SAGAALLSLAMLAMFDVLAARTVVRERIPAQLAAFAGAVTQGISNTLGFHAITGAALRYR
IYATAGLGAGDIARIVALAGFGVGLGFTVVTTGALCWQPEITRGWGRWPGAALLLALLAL
LAWLARPRTLALGRLTLALPNARIASMQMLVGGVEMLAALGALYVLLPAASAPPLVDFLP
IYVAAVLAGIASHAPGGLGVFETIMLASFPPAARADLLAAILCYRLTYTALPFVLGSVAL
AVFEWRLRRSARHRC