Protein Info for LRK54_RS10980 in Rhodanobacter denitrificans FW104-10B01

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 133 PF17775: UPF0225" amino acids 33 to 129 (97 residues), 95.8 bits, see alignment E=1.2e-31

Best Hits

Swiss-Prot: 60% identical to Y4246_XANC8: UPF0225 protein XC_4246 (XC_4246) from Xanthomonas campestris pv. campestris (strain 8004)

KEGG orthology group: K09858, SEC-C motif domain protein (inferred from 59% identity to slt:Slit_2346)

Predicted SEED Role

"UPF0225 protein YchJ"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (133 amino acids)

>LRK54_RS10980 hypothetical protein (Rhodanobacter denitrificans FW104-10B01)
MKAIDTLTPCPCGNPAGYSQCCGPLHDGAPAASAEQLMRSRYSAYVLKREDYLLTSWHAD
TRPASLRLAAQQPPPTWLGLEVRRQQALDDDHATVEFVARYRLGGGRAQRQHETGRFVRE
GGRWYYHDGELKS