Protein Info for LRK54_RS10930 in Rhodanobacter denitrificans FW104-10B01

Annotation: permease-like cell division protein FtsX

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 326 transmembrane" amino acids 49 to 72 (24 residues), see Phobius details amino acids 197 to 219 (23 residues), see Phobius details amino acids 232 to 244 (13 residues), see Phobius details amino acids 253 to 276 (24 residues), see Phobius details amino acids 294 to 316 (23 residues), see Phobius details PF18075: FtsX_ECD" amino acids 88 to 180 (93 residues), 43.5 bits, see alignment E=4e-15 PF02687: FtsX" amino acids 203 to 312 (110 residues), 35.9 bits, see alignment E=6.7e-13

Best Hits

KEGG orthology group: K09811, cell division transport system permease protein (inferred from 46% identity to xoo:XOO4299)

Predicted SEED Role

"Cell division protein FtsX" in subsystem Bacterial Cell Division

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (326 amino acids)

>LRK54_RS10930 permease-like cell division protein FtsX (Rhodanobacter denitrificans FW104-10B01)
MNTSTETLHVPADAPPRNVHSRGNRFASWQEHHRWSAASSLRRLAARPFGSLLTIAVMGL
ALALPLTFYLLLGNVQQLGNALGQSQAISVFLQPGQTAPQAQLLARQLGDRPEVAAVTVK
TPQQGMDELAQMQGFSGALQTLDDNPLPYVLQLQPRAGVDAHALEQLVADVRTLRSVELV
QDSGSWRQRLDALLGVGNRVVLVLASLLALAALLVVGNTIRVDIASRSEEIGVLLLVGAS
GAFVRRPYLYAGIWYGLFSGVLAALLAVAIELALAAPVAQLSQAYDGKLHIGGLPLWLLL
AVPLVAAALGWLGARLVSAWQLRRAA