Protein Info for LRK54_RS10705 in Rhodanobacter denitrificans FW104-10B01

Annotation: alpha/beta hydrolase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 314 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details PF00561: Abhydrolase_1" amino acids 66 to 300 (235 residues), 106.6 bits, see alignment E=3.5e-34 PF12146: Hydrolase_4" amino acids 67 to 163 (97 residues), 35.2 bits, see alignment E=1.7e-12 PF12697: Abhydrolase_6" amino acids 68 to 305 (238 residues), 81.8 bits, see alignment E=2.3e-26

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (314 amino acids)

>LRK54_RS10705 alpha/beta hydrolase (Rhodanobacter denitrificans FW104-10B01)
MLRRRLKFLAWLAALLALVLGGSYLFAPQWLLQANVAREAMAAHLEDHSVRAGDTHWVYY
EGGQGPTIVLLHGFDADKSVWLETAKLLTPHFHLIIPDLPGWGDSSRVPGASYNIDAQAG
RLDAFVRTLGLQRFLLVGHSMGGAIAGVYASEHPERMSALALLDAFGLKGKENAFDRDAL
AGRNPFVFDDHAGFERATALAYEQPLDLPGRFVDVFIQRNQRDRAFIERSFDELREPGQY
LSVQNRLGQLTMPVLGLWCHDDKIVDISALDSLRNGLTAASAISTSTINGCNHMPMEEKP
EQTAQILTGFALSH