Protein Info for LRK54_RS10160 in Rhodanobacter denitrificans FW104-10B01

Annotation: AMP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 444 PF00501: AMP-binding" amino acids 110 to 293 (184 residues), 77.1 bits, see alignment E=6.2e-26

Best Hits

KEGG orthology group: None (inferred from 59% identity to xcv:XCV4192)

Predicted SEED Role

"FIGfam138462: Acyl-CoA synthetase, AMP-(fatty) acid ligase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (444 amino acids)

>LRK54_RS10160 AMP-binding protein (Rhodanobacter denitrificans FW104-10B01)
MPLLDAVDPARIVAWHHGEPVNAACFLAQVQAVAAGLPAAPAGVNLCEDRYAFLVAFCAI
ALRGQANLLPSSRAPQAVDEVMAAHPGCYALGEQALDPAPRGYRQLPPLDAVPPLELDAA
WPSIPAGQVVAIGYTSGSTGAPGANLKTWGSFHASNAGNLALLRAAVGPRVEIVATVPPQ
HMYGMEMSVLLPLLGDVGVHAGRPFFPADVAAALAEVPAPRVLVTTPVHLRALVESGIAL
PPVAAMVSATAPLPVELARRAEQRFGAPLLEVFGSTETCVFASRRPAVDEDWSLYDGASL
HPQPDGTLVQAPQLDAPVALADIVSLSDGGRRFRLCGRHADLLEIAGKRASLGDLTRRLL
AIPGVRDGAVFQLDDGDALGVHRIAALAVAPGLDAHAILDALRRAIDPLFLPRPLKLVEA
LPRNETGKLPRAALLALLGQHDDD