Protein Info for LRK54_RS10090 in Rhodanobacter denitrificans FW104-10B01

Annotation: glycosyltransferase family 2 protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 271 signal peptide" amino acids 1 to 17 (17 residues), see Phobius details transmembrane" amino acids 226 to 242 (17 residues), see Phobius details PF00535: Glycos_transf_2" amino acids 9 to 124 (116 residues), 62.3 bits, see alignment E=2.9e-21

Best Hits

KEGG orthology group: None (inferred from 71% identity to xal:XALc_2852)

Predicted SEED Role

"Lipopolysaccharide core biosynthesis glycosyl transferase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (271 amino acids)

>LRK54_RS10090 glycosyltransferase family 2 protein (Rhodanobacter denitrificans FW104-10B01)
MPTFPLTLAVITRNEAGSIARCLDSVPFAAEKLVVDSGSEDDTVAIAQAHGARVVHQDWL
GFGAQRNFATTQCAHDWILVLDADEYLSPALAAELQQRLPALMDGDAPAAYLRRRTIYMG
RPMRWYRPSVGEKLARLYHRGRARWSDARVHESLRFDGAAPTLRAPFDHANNPTLPHKQL
KVLRYAELKCRDWLDKGKPVRMWQAPFVYLLAFVKDYLFRLAFLDGWRGFLIAQTAASYA
LYKRMRYYEMVSHPESVASAADLLHQHDIDR