Protein Info for LRK54_RS09415 in Rhodanobacter denitrificans FW104-10B01

Annotation: FecR family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 transmembrane" amino acids 98 to 118 (21 residues), see Phobius details PF16220: DUF4880" amino acids 18 to 59 (42 residues), 50.7 bits, see alignment 2e-17 PF04773: FecR" amino acids 127 to 219 (93 residues), 80.8 bits, see alignment E=1.3e-26

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (350 amino acids)

>LRK54_RS09415 FecR family protein (Rhodanobacter denitrificans FW104-10B01)
MKTDELHIASVGDPARHEAAAWFARLRADDVSERERDEFQRWLADNSRHRVAYERLEALW
SSLGAHADRPEIGRALRDSQLLRRHSTRTQRPRRQQAPAWLAAAALLVVVLAGSWFAWRA
QQADVRTYATDVGERRTLMLEDGSRVTMDTDTQLSASFSAKSRRLVLEKGRAFFHVAKDA
GRPFLVTAQGGVVRAVGTRFDVYEHDDVVEVTLVEGRVEVTPESGQQDPHELPTTMTAGQ
RLLMGKRYATPVIESANTGTAVAWLSGKLVFNDTPLPAAVAQFNRYTTSKIVIGDAAVGQ
LRVSGVFRDDSSHAFIDALRSSYGISISQGNAGGLTLLSGKAVKQRASHE