Protein Info for LRK54_RS09025 in Rhodanobacter denitrificans FW104-10B01

Annotation: glycosyltransferase family 39 protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 571 transmembrane" amino acids 21 to 40 (20 residues), see Phobius details amino acids 101 to 121 (21 residues), see Phobius details amino acids 128 to 148 (21 residues), see Phobius details amino acids 153 to 172 (20 residues), see Phobius details amino acids 184 to 215 (32 residues), see Phobius details amino acids 227 to 247 (21 residues), see Phobius details amino acids 275 to 296 (22 residues), see Phobius details amino acids 309 to 327 (19 residues), see Phobius details amino acids 334 to 356 (23 residues), see Phobius details amino acids 363 to 384 (22 residues), see Phobius details amino acids 396 to 419 (24 residues), see Phobius details amino acids 425 to 443 (19 residues), see Phobius details PF02366: PMT" amino acids 45 to 252 (208 residues), 53.7 bits, see alignment E=3.5e-18 PF13231: PMT_2" amino acids 78 to 243 (166 residues), 59.8 bits, see alignment E=5.9e-20 PF18583: Arnt_C" amino acids 458 to 560 (103 residues), 86.2 bits, see alignment E=1.7e-28

Best Hits

Predicted SEED Role

"Polymyxin resistance protein ArnT, undecaprenyl phosphate-alpha-L-Ara4N transferase; Melittin resistance protein PqaB"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (571 amino acids)

>LRK54_RS09025 glycosyltransferase family 39 protein (Rhodanobacter denitrificans FW104-10B01)
MSVKHMAQNDVRPAGAWHARFSAAAVLLGIGWLAAWFYGLAGRALAEPDEGRYAEVAHEM
FTSGDWITPRLDGFNFFDKPPLHYWASATAYALFGAHPWSARLWCALTGLLAIVAIGWAG
ARLFGREAGGYAAVILGSSLLFVFAAHINTLDIGVAAFLAVGMACFLVAQFDPTARHLRT
RLNLLMWAALALAVLSKGLIGVVLPGMILGIFMLWQRDWGVLRRVSLVPGVLVLLVLCAP
WFILICRLHPDFFDYFFIREHFTRFLTSADGRSKVFGFFLPVVLLGLFPWTLLLPWSKTS
WRAIGAGGPAQRFLLVWVGVVFVFFSFSHSQLPFYILPVFPALALLLGRAATVLSLQALV
RRFWWVATLTTLGAATATAIALAARTAIPKAVLQDVLSGLSLALVLMALAAMVGTWALHR
GRRRTAIHGLALATLIAWQLTLVSSQPLNDMRSADPVARLIQPELGPHTEVFTVHAYLRA
LPFYLGRPVTVVDQDSDDLTPGLASRPDGYIADLATFEQRWRASHDAIALVADDLVGQLR
SEGLPFRELGREATGVIITRHETAPPLRSTP