Protein Info for LRK54_RS08740 in Rhodanobacter denitrificans FW104-10B01

Annotation: Bax inhibitor-1/YccA family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 251 transmembrane" amino acids 39 to 57 (19 residues), see Phobius details amino acids 64 to 84 (21 residues), see Phobius details amino acids 93 to 112 (20 residues), see Phobius details amino acids 118 to 138 (21 residues), see Phobius details amino acids 150 to 173 (24 residues), see Phobius details amino acids 185 to 204 (20 residues), see Phobius details amino acids 223 to 243 (21 residues), see Phobius details PF12811: BaxI_1" amino acids 5 to 248 (244 residues), 273.2 bits, see alignment E=1.9e-85 PF01027: Bax1-I" amino acids 41 to 244 (204 residues), 36.7 bits, see alignment E=3.8e-13

Best Hits

KEGG orthology group: None (inferred from 65% identity to xcb:XC_3267)

Predicted SEED Role

"FIG01209733: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (251 amino acids)

>LRK54_RS08740 Bax inhibitor-1/YccA family protein (Rhodanobacter denitrificans FW104-10B01)
MQSGNPALNKNTFLDASSGAVFTRGDEAMTINGTVNKTGLLLLLVLVGAMVSWSRFAGPD
SLPAMLPLVLGGALGGLVLGLVTAFKKTWAPFTAPLYAVAEGLFIGALSAIFELRYPGIV
MQAVGLTFGTMAALLLAYRSGLIRATEKFKLGIVAATGGIMLLYLANFAMGFFGHSIGFI
NGSSGVGIAFSAVVVVIAALNLILDFDLIETGAQQGAPKYMEWYGAFALVVTLVWLYLEL
LRLLSKLQSRN