Protein Info for LRK54_RS08430 in Rhodanobacter denitrificans FW104-10B01

Annotation: hybrid sensor histidine kinase/response regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1162 transmembrane" amino acids 6 to 25 (20 residues), see Phobius details amino acids 37 to 56 (20 residues), see Phobius details amino acids 68 to 87 (20 residues), see Phobius details amino acids 115 to 134 (20 residues), see Phobius details amino acids 156 to 178 (23 residues), see Phobius details amino acids 190 to 214 (25 residues), see Phobius details amino acids 234 to 252 (19 residues), see Phobius details amino acids 276 to 299 (24 residues), see Phobius details amino acids 321 to 350 (30 residues), see Phobius details amino acids 374 to 394 (21 residues), see Phobius details amino acids 406 to 427 (22 residues), see Phobius details amino acids 434 to 456 (23 residues), see Phobius details amino acids 489 to 507 (19 residues), see Phobius details PF12860: PAS_7" amino acids 639 to 753 (115 residues), 152.6 bits, see alignment E=1.2e-48 PF00512: HisKA" amino acids 794 to 859 (66 residues), 46.2 bits, see alignment 9.3e-16 PF02518: HATPase_c" amino acids 904 to 1013 (110 residues), 74.5 bits, see alignment E=2.3e-24 PF00072: Response_reg" amino acids 1037 to 1147 (111 residues), 50.3 bits, see alignment E=6.2e-17

Best Hits

Predicted SEED Role

"Sensory box histidine kinase/response regulator"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1162 amino acids)

>LRK54_RS08430 hybrid sensor histidine kinase/response regulator (Rhodanobacter denitrificans FW104-10B01)
MIQGWMLLLVSLLYVGLLFVVAYAGDRRPLYPRQPRLRPIVYSLALAVYCSSWTFYGAVG
TAARDGLAYLPIYLGPILLFVFGFGLLRRLVQTVRQRNITSIADFIGARFGKSHGLAALV
AVIAVVAVVPYIALQFKAVAMSYSVLGGVRHGMVTAGGVDSALWCAVLLAVFAILFGTRS
IDATEHHHGMMLAIALESLIKLLAFVALAGYALWQGPGLADTVQLPAAQLSHGLSPGFLA
QTMLAFCAMFCLPRQFQIGMVECEDTDDLTRARWMVPLYLVIVSVAVLPIVAAGAHLPLV
RDGAADAWVLTLPMAHGDRGMALLAFIGGFSAATGMVIVASVALSTMISNDLVMPALLRI
RPLRLEQRSDLSQLVLGVRRVAIILLAVMAYAYYRAAANAENLAATGLLAFAAVAQFAPA
LIAALYWRGASRRGVIVGLAGGFAVWLYTLLLPALIRSDGWLQHGPFGWDWLRPQALFHL
SGWDPVMHGTFWSLLTNVGCLVFVSLRLRPSLEERLHAAMFMDADPASRGGSGDWRGRVA
VADLRTIAERIVGERSSVRAFEEYGQRRGKPLLAGEAADRALIQYTERLLASAVGAANAR
RILISALSGSGLDLAESMALLDEASQELRFNRELLSTTLENVSQGISVVDARMRLVAWNR
RYLELFDYPDGMVHVGVPVAELIRWNAERGECGPGEVEAHVAKRIQYMRAGSAHLFQRVR
PDGTVIEMRGRALPGGGYVTTYTDVTAYKHAEQALIEVNETLEQRVEQRTAELSEALVAT
AQARRAAETANISKTRFLAAASHDLLQPLNAARLFTSALRQHPGLDPEASGLAERIDASF
RAAEDLLDALLDVSRLDAGSYHPEVGAFALAELFDSLTAQFAVVAERRGLRLRVVPTRLA
VRSDPQLLRRILQNFLSNALRYTSKGSVLLGARRVGVDEVRIEVWDSGPGIAAEQRARIF
DEFQRLEQPSPWGEKGLGLGLSICDRLAGILGHRLDLHSRVEHGSCFAVTVPRNEAVPVR
RQRVQRSGTDKQLPLTVLCLDNDAAILDGMRALLSRWGVDCRIALDAAQARDELRRGTVD
LILADYHLADDADGLQVLQQLRQTLGDLPPVAMITADGSSELKQRARALGYPLLHKPVRP
AALRALLTALVRRQGEPASSAD