Protein Info for LRK54_RS08085 in Rhodanobacter denitrificans FW104-10B01

Annotation: c-type cytochrome

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 463 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details transmembrane" amino acids 428 to 450 (23 residues), see Phobius details PF00034: Cytochrom_C" amino acids 31 to 128 (98 residues), 27.4 bits, see alignment E=7.1e-10 amino acids 187 to 282 (96 residues), 22.2 bits, see alignment E=2.9e-08 amino acids 321 to 400 (80 residues), 35.7 bits, see alignment E=1.9e-12 PF13442: Cytochrome_CBB3" amino acids 320 to 400 (81 residues), 39.4 bits, see alignment E=6.4e-14

Best Hits

KEGG orthology group: None (inferred from 63% identity to har:HEAR2558)

Predicted SEED Role

"2-Keto-D-gluconate dehydrogenase (EC 1.1.99.4), membrane-bound, cytochrome c" in subsystem D-gluconate and ketogluconates metabolism (EC 1.1.99.4)

MetaCyc Pathways

Isozymes

Compare fitness of predicted isozymes for: 1.1.99.4

Use Curated BLAST to search for 1.1.99.4

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (463 amino acids)

>LRK54_RS08085 c-type cytochrome (Rhodanobacter denitrificans FW104-10B01)
MNVSTCGRLLLALLVTASAHAADTTDATLLQRGQYLATAGDCVACHTAPGGKPYAGGLTV
PTPVGNIISTNITPSTTAGIGRYTEPQFRDALRKGIRADGAHLYPAMPYTSYAQVTDDDV
RALYAYFMHGVAPVDNRPALTRLPFPFNLRLSMAGWNLLFLDRKPFTPDPAKDAKWNRGA
YLVRGLAHCSTCHTPRNLLMAERSSRELAGGMVGSWLAPNITADANSGIGGWSEQDLVDY
LQLGHARGKAQAAGPMAEAVEHSLQHFEPADLQAIASYLKTVPARHDPADTRAVGGWGAA
FDGMADQRGIAPPADAEQWSGEQLYDAHCASCHQAGGEGSFDGGLPPLFHNTATGRIASG
NLVLVILEGIRWQTGDSGVHMPGFAGDLSDQQIATLGNYLTLRYGNPAARITATRVANLR
AGGAPSHLAALVLLAMVVVVVLILAIIVLWRRRKRRRTSSGPA