Protein Info for LRK54_RS07835 in Rhodanobacter denitrificans FW104-10B01

Annotation: TonB-dependent receptor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1011 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details PF13620: CarboxypepD_reg" amino acids 23 to 87 (65 residues), 34.8 bits, see alignment 2.7e-12 PF07715: Plug" amino acids 110 to 213 (104 residues), 34.8 bits, see alignment E=3.1e-12 PF00593: TonB_dep_Rec" amino acids 340 to 705 (366 residues), 35.9 bits, see alignment E=1.2e-12

Best Hits

Predicted SEED Role

"Oar protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1011 amino acids)

>LRK54_RS07835 TonB-dependent receptor (Rhodanobacter denitrificans FW104-10B01)
MSLGGVAMAQSTTGSIFGQAPAAAGETVSATNASGLTREVAVDSSGRFQISNVPVGTYTV
SLKKDGAVVDSRKVSLAPGAGTAVTFSAETTSLSAVTVSANALPAIDVSSVSSSTVITAA
DLRKLPVSRNAESIALLAPGTTSGSNFFNGPGGHSLVSFGGSSVTENAYYVNGYNTGEPY
KNLGGFQLPYGAIDQQETLTGGYNAKYGRSDGGVINQLGRRGTNEWHFGAQVAWEPRFLE
GTPVNNYYGHPTVPASTSQVNYALENPALAGTLHQYRNDNKQWQTIYSAYVGGPLIQDKL
FMFLAAETSETQSNNVEIASNQKVQYNNDKDTKFYGKLDWNITDSNILELTALNNRSRNG
AGTTYAFDYNTLKSGAFVANNDVTKDNAQFYLGHFTSYITDAATLSILYGKANFQNPTIY
GNTSPLPFISRPYNQNPAYLPPGTGPNGITNNQTNTSWSANNATNGTHGLRVDFDYRLGD
HDLAVGIDNMTYKARNQGPNQQNPFNPSINYYWRYLTGGVVQKREIGWQTSMTMTQKAYY
LQDSWQVLPNLLLDIGVRNDHFTNYNDVGKAFVDEKNQWEPRIGASWDVNGDSSFKIYGN
AGRYYLALPDNAAERAANISTFLTTNYSYTGIDANGIPTGLATLDDPATTSPDGEKGLPK
DPQQVTARNLKAEYLDEFIVGFDKKLNDSWTYGAKAMWRDLKTAIDDECSPGRIGNKMVA
QGVDPAALGGAYYDSLYGASYCRLINPGLTNDILVKSSDSTHPDLLVTMSQKDWGYQQGV
KRKTGSLNLYLEHPFDGKWQARVDYTYTRGFGNTEGQVRSDFGQADVSKTEDWDSWQLMD
GANGELANVRKHQLRIRGAYQITPEWLVSATLLAQSGYPKECLGYYGVGGSGKAYYGPGK
PGDPSGYNNYGSGNYHWCNGVRYPAGTLGHTPWTEQLNLGIHYAPAFADNKLGINLDIFN
ALDQQRAVQTDPAGNSSYNRTTNTLNINNSYGDGIFFQPPRTVRLSVTYDY