Protein Info for LRK54_RS07725 in Rhodanobacter denitrificans FW104-10B01

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 285 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details transmembrane" amino acids 33 to 55 (23 residues), see Phobius details amino acids 62 to 81 (20 residues), see Phobius details amino acids 92 to 109 (18 residues), see Phobius details amino acids 115 to 134 (20 residues), see Phobius details amino acids 145 to 164 (20 residues), see Phobius details amino acids 172 to 195 (24 residues), see Phobius details amino acids 206 to 227 (22 residues), see Phobius details amino acids 239 to 260 (22 residues), see Phobius details amino acids 266 to 284 (19 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 58% identity to psu:Psesu_0049)

Predicted SEED Role

"Integral membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (285 amino acids)

>LRK54_RS07725 membrane protein (Rhodanobacter denitrificans FW104-10B01)
MIYVLLSVACSVLVSVLLKLARRFDVDVGQAIAWNYVVAAALTAWLLQPSLATLCAPGVP
RLALAALGILLPTIFLALAASVRHAGIVRSDAAQRLSLLLSLLAAFVLFGERLTAFKALG
IALGLLALLGMVWRSGHGTVTRGTAGWLYPLAVFAGFGVIDILFKRVAQAGVPLGASLQA
MFALALLVAFALQLWRRARGQARFTARSALAGALLGLANFGNILFYLRGHRALPQHPALV
FASMNLGVVALGALVGLLLFRERLSRLNLAGVGLALLAIGVIAHG