Protein Info for LRK54_RS07690 in Rhodanobacter denitrificans FW104-10B01

Annotation: heparan-alpha-glucosaminide N-acetyltransferase domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 353 transmembrane" amino acids 47 to 65 (19 residues), see Phobius details amino acids 85 to 104 (20 residues), see Phobius details amino acids 110 to 130 (21 residues), see Phobius details amino acids 137 to 157 (21 residues), see Phobius details amino acids 192 to 212 (21 residues), see Phobius details amino acids 219 to 237 (19 residues), see Phobius details amino acids 249 to 268 (20 residues), see Phobius details amino acids 280 to 303 (24 residues), see Phobius details amino acids 323 to 344 (22 residues), see Phobius details PF07786: HGSNAT_cat" amino acids 3 to 146 (144 residues), 47.5 bits, see alignment E=8.4e-17

Best Hits

KEGG orthology group: None (inferred from 63% identity to psu:Psesu_0212)

Predicted SEED Role

"N-acetylglucosamine related transporter, NagX" in subsystem Chitin and N-acetylglucosamine utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (353 amino acids)

>LRK54_RS07690 heparan-alpha-glucosaminide N-acetyltransferase domain-containing protein (Rhodanobacter denitrificans FW104-10B01)
MKRLASLDALRGCTVAAMLLVNDPGDWGHVYWPLEHAAWHGCTPTDLVFPFFLFVVGVSV
ALAILPRLEQGAAPSALTRAATWRALRILALGVAINLLAAWLLPQAHLRFPGVLQRIALC
FAGVALFAIHTKPRAQWWAIAVLLLGYWGLLLLGGSLEPWTNLVSRVDSAVFGGFVYLID
PASGRGHDPEGLLGTLPSLASTLLGLHAGCWLRREKLRALLLAGIACLLLGALWSPWLPF
NKNLWTPSFVLWTTGWATLALLAFHVLIDRHGWPALGRRFGVNAIAAYAGSELMQIALPA
LGWQQSLYQHGFAGWMTPRFGPYLPSLAFALAFVALWWLIVWAMDRRGVYLKL