Protein Info for LRK54_RS07595 in Rhodanobacter denitrificans FW104-10B01

Annotation: monovalent cation/H+ antiporter subunit A

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 969 transmembrane" amino acids 6 to 24 (19 residues), see Phobius details amino acids 34 to 56 (23 residues), see Phobius details amino acids 82 to 103 (22 residues), see Phobius details amino acids 112 to 132 (21 residues), see Phobius details amino acids 138 to 156 (19 residues), see Phobius details amino acids 168 to 191 (24 residues), see Phobius details amino acids 211 to 234 (24 residues), see Phobius details amino acids 248 to 270 (23 residues), see Phobius details amino acids 276 to 296 (21 residues), see Phobius details amino acids 305 to 352 (48 residues), see Phobius details amino acids 370 to 395 (26 residues), see Phobius details amino acids 414 to 436 (23 residues), see Phobius details amino acids 457 to 477 (21 residues), see Phobius details amino acids 505 to 528 (24 residues), see Phobius details amino acids 580 to 600 (21 residues), see Phobius details amino acids 612 to 629 (18 residues), see Phobius details amino acids 636 to 656 (21 residues), see Phobius details amino acids 662 to 684 (23 residues), see Phobius details amino acids 705 to 724 (20 residues), see Phobius details amino acids 761 to 779 (19 residues), see Phobius details amino acids 817 to 840 (24 residues), see Phobius details amino acids 847 to 867 (21 residues), see Phobius details amino acids 882 to 903 (22 residues), see Phobius details amino acids 924 to 949 (26 residues), see Phobius details PF00662: Proton_antipo_N" amino acids 71 to 116 (46 residues), 43.9 bits, see alignment 4.5e-15 PF00361: Proton_antipo_M" amino acids 132 to 413 (282 residues), 209.7 bits, see alignment E=1.4e-65 PF13244: MbhD" amino acids 621 to 685 (65 residues), 62.3 bits, see alignment 9.6e-21 PF20501: MbhE" amino acids 700 to 796 (97 residues), 156.8 bits, see alignment E=3.3e-50 PF04039: MnhB" amino acids 823 to 943 (121 residues), 118.3 bits, see alignment E=6.5e-38

Best Hits

Predicted SEED Role

"Na(+) H(+) antiporter subunit A; Na(+) H(+) antiporter subunit B"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (969 amino acids)

>LRK54_RS07595 monovalent cation/H+ antiporter subunit A (Rhodanobacter denitrificans FW104-10B01)
MPDNALPSAIICLPFAASVVVFLLRGRGRGHNLAAWLMTATALLGLLLSLWLYPAIAAGH
VLRQVIPWVPGLGLDLVFRVDGFSWLFMLLICGIGTLVGLYARYYMSPDDPLARFFALLL
AFMGSMLGIVMSGNVIQLVFFWELTSLFSFLLIGYWHHGASARDGARMALIVTSGGGLCL
FAGVLLLGHVVGSYDLDAILAAGNAVRAHALYTPTLLLILLGAFTKSAQFPFHFWLPQAM
SAPTPVSAYLHSATMVKAGVFLLVRFWPVLGGTDQWFWIVGGVGLVTLILGAYSAMFEQD
LKGVLAYSTISHLGLITMLVGLGSALGVVAAIFHIVNHATFKASLFMAAGAVDHEAGTRD
LRKLGGLRRFMPVTATLALIAGAAMAGVPLLNGFLSKEMFFAETLATRQGPLLDLVSVVI
AVAASAFGVTYSIRFVRGVFFGRVPADLPRQPHEPPLWMRFPIGFLALACLLVGMLPGRV
IGPSLRAAASAVLGAAHVPDYSLAVWHGLTAPLLMSVFAFVAGCLLFVSLRRRFDAIEAA
PLTSRVSGKRLFERALAVFAADIPQRIERRYPSRRLQSQLLWIVLLALVAGTLAATSAPF
GFRPRWSSVDPAFALLWLLGAACAIGAASQAKFHRLAALVLTGGAGLVSCVSFVWLSAPD
LAATQLLVEVVTTILILLGLRWLPKRIEGLAAESRAHRFRRRRDVFIAVVVGLGVASLAY
AAMMHPVADSISHFFLERAYTEGGGRNVVNVILVDFRGFDTLGEISVLAIVALTVFALLR
RFRPAAESIHAPLQQQRQAAPDADQPSRAVDHSLTDYLMIPGLIIQLMFPVILLFGLHLF
LRGHDLPGGGFVAGITVAVALILLYMARGARWVEAQLRVLPLRWIGAGLLLAVGTGLGSL
AFGRPFMTSHFQYLELPWLGRVPLATALLFDLGVFAVVVGATVLLLIALAHQSLRRPRQL
SAAETGGPR