Protein Info for LRK54_RS07425 in Rhodanobacter denitrificans FW104-10B01
Annotation: CoA transferase
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
KEGG orthology group: None (inferred from 61% identity to rfr:Rfer_4198)Predicted SEED Role
"L-carnitine dehydratase/bile acid-inducible protein F (EC 2.8.3.16)" (EC 2.8.3.16)
MetaCyc Pathways
- oxalate degradation II (1/3 steps found)
Isozymes
No predicted isozymesUse Curated BLAST to search for 2.8.3.16
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (399 amino acids)
>LRK54_RS07425 CoA transferase (Rhodanobacter denitrificans FW104-10B01) MSKALDGIRILDLTHMLSGPYASMIMTDLGADTVKIEPLGGEGTRALLARSAKFSRNGMG AYFITLNRGKKSICIDLKQAEGRAIFHDLVRTADVVIDNFSAGVTTKLGIDHASLSAVNS RIITCSITGFGQDGPSYQRPAFDQVVQGIGGGMSITGESGERPMRSGIPIGDLGGGMFAV MGVLAALQARSRHGHGQHVDISMLDCQVSMLNYMATMFLMSGENPLPLGNAHFVHVPYNT YHTSDGFIIVAVIYDSFWERLVNLLDIEELRIDKYRMQPGRLADRAIIDEKLNTVFRTRP TAHWMEQLSSARIPCAPVNHFSDTLADPQVLHRHMVVKVKQAGGDVVAVPGNPVKLSLDG DDLFGSPPLLGEHTDQVLAEILGYAPEKISALRNDKVVA