Protein Info for LRK54_RS07245 in Rhodanobacter denitrificans FW104-10B01

Annotation: transglycosylase SLT domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 677 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details PF14718: SLT_L" amino acids 409 to 468 (60 residues), 51.4 bits, see alignment 9.5e-18 PF01464: SLT" amino acids 490 to 596 (107 residues), 94 bits, see alignment E=4.6e-31

Best Hits

Predicted SEED Role

"Soluble lytic murein transglycosylase precursor (EC 3.2.1.-)" (EC 3.2.1.-)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.2.1.-

Use Curated BLAST to search for 3.2.1.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (677 amino acids)

>LRK54_RS07245 transglycosylase SLT domain-containing protein (Rhodanobacter denitrificans FW104-10B01)
MSVFLSPRRILLTGLLLAGWLLTSVPARAAAPDAAQRAAFRQAYAAAQQGGDGWRQLAAN
LHDYPLYPYLPAAALQHDIQQLDRASVEAYLAQYPDWIPAADLRRAFLRELARRQDWSTF
LALYQSGLGDTLACDALQARLAGGGTLEFERDLAALWAKPSLPDACDPVLAAAHTQGLLT
EARLWTRIDRAADAGQAGTIASLAGWLAEPGRASALQLALALRDPAAALDAARSWPNQPR
QRQAATLALTRQARRDVDAADAAWQQLQSRFGFSEAQRNQILQALALYHATDFDDGALAR
LIALPAAAQTDGTREWRVRVALAQQDWSAVLAGLDAMPADQRQDSEWQYFRGRALAALGR
DDEARPLFEAQADKPTFFGFLSADRLDRPYAICPLTLADDPQREQALLANPGLLRAFELY
AVDLPKFARREWARALQDADPDTQRVAADMANRRGWYDRAVFTLSSGDALRLYDLRFPLA
SQDGLVPQAGQAGIEPAWAYGILRAESAWMSDAQSGADARGLMQLLPATAALVAKRNGLD
WGGGDTLYDPATNIALGTRYLAQMAARFNGSPWLASAAYNAGPNKVEQWLATRGMLAPDL
FVATIPYRETREYVARVMAFSVIYDWRLSGDTVVPLATRMSPIGQPYAVPTAATARRAVD
CPAEAASAAAVAGSVSP