Protein Info for LRK54_RS06985 in Rhodanobacter denitrificans FW104-10B01

Annotation: spore coat U domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 193 signal peptide" amino acids 1 to 44 (44 residues), see Phobius details PF05229: SCPU" amino acids 48 to 189 (142 residues), 104.8 bits, see alignment E=2.3e-34

Best Hits

KEGG orthology group: None (inferred from 38% identity to esc:Entcl_2275)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (193 amino acids)

>LRK54_RS06985 spore coat U domain-containing protein (Rhodanobacter denitrificans FW104-10B01)
MPFAYGPAPVPQIHPERIVMMFKKTLLAAAVFALGGFVFPAGAATNPATSTFQVKLKINK
ACTVSTGAALDFGSTDANSTGNLTTSASNINVTCSKKTAYSVDLTPTSNSADGTGSMKGG
IVGNADTIAYALYQDSGDTTAWGNGANTLSATNGLVVGNGTAQNYTVYGKVLGTNLNVQP
DTYTDTVTVSVAY