Protein Info for LRK54_RS06935 in Rhodanobacter denitrificans FW104-10B01

Annotation: DNA recombination protein RmuC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 480 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details PF02646: RmuC" amino acids 173 to 457 (285 residues), 247 bits, see alignment E=1.2e-77

Best Hits

Swiss-Prot: 51% identical to RMUC_XYLFA: DNA recombination protein RmuC homolog (rmuC) from Xylella fastidiosa (strain 9a5c)

KEGG orthology group: K09760, DNA recombination protein RmuC (inferred from 55% identity to bte:BTH_I1701)

Predicted SEED Role

"DNA recombination protein RmuC" in subsystem DNA repair, bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (480 amino acids)

>LRK54_RS06935 DNA recombination protein RmuC (Rhodanobacter denitrificans FW104-10B01)
MSLAEILLITLVILAALMLLSQVASLLRGRGDPGLGAKLDALKDDSARVERTLREEQRAG
REELQQGFDRFRGHVGEQLGGMSQQQAERIDGFGQRLAALTDGTSQGLQMLAQQLAEDAR
KSREETTLALNRFGEQQQQRFSALSAEHEKRMGEVRATLEAKLGAIQQDNAAKLEQMRAT
VDEKLQSTLEVRLGQSFQLVSERLEAVQRGLGEMQSLATGVGDLKRVLGNVKTRGVLGET
QLGALLEQLLTPDQYAANVAVVPNSDARVEYAIHMPNGIDGAALWLPIDAKFPLEDYQRL
QEAHENANATAATDAANALERRVREEAKRIRSKYVVPPHTVDFAILFLPTEGLFAEVLRR
PGLFESLQRDHHITIAGPTTLAAILTSLKAGFRTLAIEKRSSEVWQLLGAVKTEFGKFGA
VLDKVKKNLDQASNQIDATGARTRAIERRLRGVETAPGEVSRQLLDDDVPAPDENDDAEA