Protein Info for LRK54_RS05780 in Rhodanobacter denitrificans FW104-10B01

Annotation: S1/P1 nuclease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 273 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF02265: S1-P1_nuclease" amino acids 24 to 270 (247 residues), 192.2 bits, see alignment E=8e-61

Best Hits

KEGG orthology group: None (inferred from 50% identity to xal:XALc_2307)

Predicted SEED Role

"Endonuclease"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (273 amino acids)

>LRK54_RS05780 S1/P1 nuclease (Rhodanobacter denitrificans FW104-10B01)
MSLRRCSLAFAAILFAVAPAVRAWGPLGHRVVAELAQRHLGPAARAEVERLLAADHVTRL
ADVANWPDQIQDDPAQATLWQQTRKLHYVNFRGGPGCDYLPPRDCRDGACIVAGLARYVA
ILGDKAQGDAARLEALKFVVHFAGDVHQPLHAGYRDDLGGNRYQVQFEGKGSNLHRVWDS
GMLGTRGLDWQAYAAKLDAEGPAPLPAPIAPLGDPYAQWAEESCRATAVAGFYPDGHKIG
RTYVDAELPVAENRLRIAGRRLAAVLNLALAPR