Protein Info for LRK54_RS05325 in Rhodanobacter denitrificans FW104-10B01

Annotation: DUF1304 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 120 transmembrane" amino acids 6 to 27 (22 residues), see Phobius details amino acids 49 to 70 (22 residues), see Phobius details amino acids 76 to 96 (21 residues), see Phobius details amino acids 102 to 119 (18 residues), see Phobius details PF06993: DUF1304" amino acids 11 to 117 (107 residues), 149.1 bits, see alignment E=2.3e-48

Best Hits

KEGG orthology group: K08987, putative membrane protein (inferred from 64% identity to del:DelCs14_4728)

Predicted SEED Role

"protein of unknown function DUF1304"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (120 amino acids)

>LRK54_RS05325 DUF1304 domain-containing protein (Rhodanobacter denitrificans FW104-10B01)
MSVAANLVIGLIALLHVWFLILEMFLWTRPSGRRAFGTTAEFAEQSKALAANQGLYNGFL
AAGLVWGLLLGNGGAGFSVKLFFLGCVLLAGIYGGLTAARKILLFQALPAAIALVLIHLA