Protein Info for LRK54_RS05290 in Rhodanobacter denitrificans FW104-10B01

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 528 transmembrane" amino acids 17 to 40 (24 residues), see Phobius details amino acids 46 to 67 (22 residues), see Phobius details amino acids 86 to 107 (22 residues), see Phobius details amino acids 120 to 144 (25 residues), see Phobius details amino acids 154 to 171 (18 residues), see Phobius details amino acids 177 to 195 (19 residues), see Phobius details amino acids 202 to 221 (20 residues), see Phobius details amino acids 253 to 274 (22 residues), see Phobius details amino acids 331 to 349 (19 residues), see Phobius details amino acids 356 to 377 (22 residues), see Phobius details amino acids 384 to 402 (19 residues), see Phobius details amino acids 429 to 454 (26 residues), see Phobius details amino acids 461 to 480 (20 residues), see Phobius details amino acids 499 to 520 (22 residues), see Phobius details

Best Hits

KEGG orthology group: K06901, putative MFS transporter, AGZA family, xanthine/uracil permease (inferred from 66% identity to smt:Smal_3148)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (528 amino acids)

>LRK54_RS05290 hypothetical protein (Rhodanobacter denitrificans FW104-10B01)
MNIPANRWFAPGDLNGFLGLVVDNLSIMGFLAAALIGLFGFPADIVFLRMFPGTALGVLL
GNLAYTVMARRLARRRGSNTVTAMPLGLDAPTSIGMALLVLGPAFLGFRQGGMDEHAAAI
ATWQLGMAALVVMGVLKFVLSFFGAMVQRHVPRAGLLGSIAGIALVLMGFLPLVEILKLP
VVGFAGLGVVLYALVAHGRMPFGLPGVLVAFVLGALLYYGLGPLGWLGAGYHAPAAWQWR
FALPWPTLQWVQGLAYIVPYLPLILPFGLLMVVGGINVTESARAAGDDYSTRDILLVEAL
ATLAAGFCGGVAQTTPYIGQPSYKAMGARSGYTLLTGIVIGLGGVFGYLSNLVELLPLPV
LAPILVFVAIGITVQAFEATPMRYAAAVVFSFFPAIARMLTIKLSDPAYVSPEHFAQLFN
DGTHGISELAVITVLGNGFIITAMVWASFVVALIDRRPLRAALILLLGGALSLFGVIHSV
ELSGGIYLPWLLDAASRSIVWQFAGAYAVLAIVLVLLSLGGRGRAAVR