Protein Info for LRK54_RS05285 in Rhodanobacter denitrificans FW104-10B01

Annotation: APC family permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 623 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details amino acids 44 to 65 (22 residues), see Phobius details amino acids 85 to 105 (21 residues), see Phobius details amino acids 139 to 159 (21 residues), see Phobius details amino acids 170 to 189 (20 residues), see Phobius details amino acids 209 to 227 (19 residues), see Phobius details amino acids 245 to 268 (24 residues), see Phobius details amino acids 288 to 310 (23 residues), see Phobius details amino acids 352 to 368 (17 residues), see Phobius details amino acids 374 to 396 (23 residues), see Phobius details amino acids 408 to 429 (22 residues), see Phobius details amino acids 435 to 454 (20 residues), see Phobius details amino acids 466 to 489 (24 residues), see Phobius details amino acids 495 to 517 (23 residues), see Phobius details amino acids 537 to 555 (19 residues), see Phobius details amino acids 566 to 584 (19 residues), see Phobius details PF13520: AA_permease_2" amino acids 14 to 432 (419 residues), 171.4 bits, see alignment E=3.3e-54 PF00324: AA_permease" amino acids 17 to 387 (371 residues), 125.6 bits, see alignment E=2.3e-40

Best Hits

Predicted SEED Role

"Amino acid transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (623 amino acids)

>LRK54_RS05285 APC family permease (Rhodanobacter denitrificans FW104-10B01)
MSQASQIRRDVGPFALMLTGLGSIIGSGWLFGAWRAAQIAGPGAIWAWVIGAAIIMTVAL
TYAELGAMFPESGGMVRYGHYSHGSLVGFIAAWANWIAIVSVISVEAEASAQYMSSWKWQ
WAKDLYHQMPGGHGELSTNGLLIAAVLVVMYFLFNFWSVKLFARSNTAITLFKLIIPALT
AVLLIASGFHAENFSVGIHGELHKTDFPSILTAVAIAGIVFSFNGFQSPVNLAGEARNPG
KSIPFAIVCSILLATVVYVLLQVAFIGAVPREMLANVGWHGINFSSPFADLAIILGLQWL
ATLLFIDAVISPSGTGMTYTATTARMLYGMERNGTLPKILGRVHPKWGIPRPAMWVNLAV
SFLFLFFFRGWGSLAAVISVATIISYLTGPVSVMTLRRTAPGLHRPLRLGGLSVLAGIAF
IMSTELLYWAKWPLTGEIILLMVVALPVYFYFQTMADDFFKPLERMILLVSSIAPAVLLS
MLAGAFYLYSSDSPIATPLFLAGLAYSWVMFAVVIPVFRMRSDASAMDSFKHHLRGAWWL
VCYLPVLAFVSWAGSTTFGGQGYLSYGWDLAVVAAIGLVFYLWGVKSGWRTPSVEAAELE
AKVDPNAPLVPPDEATAERITGH