Protein Info for LRK54_RS05280 in Rhodanobacter denitrificans FW104-10B01

Annotation: DEAD/DEAH box helicase family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 979 PF04851: ResIII" amino acids 62 to 353 (292 residues), 42.5 bits, see alignment E=3.3e-15

Best Hits

Predicted SEED Role

"FIG00897069: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (979 amino acids)

>LRK54_RS05280 DEAD/DEAH box helicase family protein (Rhodanobacter denitrificans FW104-10B01)
MADPIQPLALAAALTRRTEQLCIGLEQGIADLYELVTPVTAALLRWWFGEDACQSRTFNF
HPGQKQAILNVIVAHEVLASPNLKDLYQQVCADALLEGTRLADVAQDKHGHPKYCLKMAT
GTGKTWVLQALLVWQLLNKTAALDEGRDDPRFTRRFLIVAPGLIVYERLLDAFLGKENED
KSRDFASSDIASYAELFTPPARRERIAQFVRGNVCQKQEIGLKATGNGMIAITNWHLLSE
AEEEAEQEEAARVDTPGMVADAARVAYDVLPLTPGRATGNSLAVLDRRWARGNVLSYLAD
LPDLMVFNDEAHHIHELKSGGETSEVEWQKSLSVIAAGKGRRFVQMDFSATPYNDVGSGR
KKAKLYFPHIVVDFDLKAAMRLGLVKSLVLDKRKELGALPLEFKAERDGDGNVALAEGQR
VMLRAGLQKLRKLEADFARLDPGRHPKMLVVCEDTTVSPLVARFLCEEGLHDDDVLTVDS
GRKAELGEKDWAPLRQRLFNVDRHAQPRVIVSVLMLREGFDVNNICVIVPLRSSQAQILL
EQTIGRGLRLMWRDPEYADIKRENRERINRGEEPGSLIDILSIVEHPAFQSFYDELMREG
LVGSTGDDDEGSSIGDLVAAELREGYEQYDFAIPFILREADDSVEHLPIDVAALPSFSAM
SRAKLAELLGKGDTFTSQDLQSSTLFGDYRVDGVAMDVSGYNELLSRLTRRVSQALSHPL
PKGNKVSPHLDRPYLQMNTAALATALDDYIRERLFGEVFEPFEGEGWRLLLLQPVLDHIV
KIFALALVRAEEHTVRGSTEVHHRRLSEVTKLMVRESASLEVSKCIYTRLPYPTRSGGLE
RAFIEWAQADAGIEAFCKISENRHDFARLRYIKDDGLPAFYIPDFLVRTAEAIYLVETKA
QQQVSHPNVQRKLKAATTWCERINALDAEQRGGRVWHYALVGESLFYDWREKGARLGELL
AFSRARAAPTAQSQGGLAL