Protein Info for LRK54_RS05055 in Rhodanobacter denitrificans FW104-10B01

Annotation: L-fucose:H+ symporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 445 transmembrane" amino acids 29 to 51 (23 residues), see Phobius details amino acids 62 to 84 (23 residues), see Phobius details amino acids 95 to 114 (20 residues), see Phobius details amino acids 120 to 145 (26 residues), see Phobius details amino acids 159 to 181 (23 residues), see Phobius details amino acids 212 to 232 (21 residues), see Phobius details amino acids 258 to 280 (23 residues), see Phobius details amino acids 301 to 320 (20 residues), see Phobius details amino acids 326 to 343 (18 residues), see Phobius details amino acids 349 to 372 (24 residues), see Phobius details amino acids 384 to 403 (20 residues), see Phobius details amino acids 409 to 428 (20 residues), see Phobius details TIGR00885: L-fucose:H+ symporter permease" amino acids 32 to 429 (398 residues), 283.9 bits, see alignment E=2.5e-88 PF07690: MFS_1" amino acids 36 to 385 (350 residues), 80.5 bits, see alignment E=6e-27 TIGR01272: glucose/galactose transporter WARNING" amino acids 110 to 426 (317 residues), 331.8 bits, see alignment E=5.1e-103

Best Hits

KEGG orthology group: K02429, MFS transporter, FHS family, L-fucose permease (inferred from 72% identity to sml:Smlt2182)

Predicted SEED Role

"Predicted mannose transporter, GGP family" in subsystem Mannose Metabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (445 amino acids)

>LRK54_RS05055 L-fucose:H+ symporter permease (Rhodanobacter denitrificans FW104-10B01)
MAFAAAPSSTPAPTPEHAGHEPYTSHPMALGVLTTIFFMWGFLTCLNDILIPHLKSIFQL
NYAQVMLVQFTFFGAYFLMALPAGRLVAALGYKKGIVAGLAIAGVGALGFWPAAGLHLYP
AFLGALFVLATGITVLQVAANPYVALLGPEKTSSSRLTLAQALNSFGTFLAPWFGGLLIL
SNVVKSPTELAALEPAQRLLYDTQQAQAVQGPYIGLAVVLFLLAVFVWLFRLPALSEATD
KGDHARHGFADVLRHPHVLFGVLGIFFYVGAEVSIGSFMVNYLSMPEIGHLSEQQAAKYV
SWYWGGAMVGRFAGSALMAAFSPRKLLAAFAAINALLVLTTMSSSGALAMYSIIAIGLFN
SIMFPTIFALGIERLGPMTSKASSLLIMAIVGGAIMPPLQGLFADHIGLQHAFFLPLLCY
LYIVFYGLRGSRIRSLPAADASGTH