Protein Info for LRK54_RS05050 in Rhodanobacter denitrificans FW104-10B01

Annotation: GH92 family glycosyl hydrolase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 759 TIGR01180: putative alpha-1,2-mannosidase" amino acids 15 to 740 (726 residues), 642.9 bits, see alignment E=3.1e-197 PF17678: Glyco_hydro_92N" amino acids 16 to 267 (252 residues), 246.7 bits, see alignment E=3e-77 PF07971: Glyco_hydro_92" amino acids 273 to 736 (464 residues), 593.8 bits, see alignment E=2.8e-182

Best Hits

KEGG orthology group: None (inferred from 68% identity to sur:STAUR_5331)

Predicted SEED Role

"Alpha-1,2-mannosidase" in subsystem Mannose Metabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (759 amino acids)

>LRK54_RS05050 GH92 family glycosyl hydrolase (Rhodanobacter denitrificans FW104-10B01)
MASAPALAAHGHAADVDPRIGTGGDGHTFPGATVPFGMIQLSPDTAMPDFRHAYKWAAGY
QYGDSSILGFSHTHFSGSGHSDLGDVLVMPIAGDVRLEPGDPARPGSGYRSRFSHASEVV
QAGYYAVTLGDYGVRAELTVGRRVGWHRYTFPAGKPAHVLLDLRPSIYDYPGKVLWASLR
VHADGTVSGCRSTRGWAPGRELCFALRFSQPMTSRELYNRETDITYKGFKGPGNQAEDRD
AQGGRALLGVFDFGMLKQPLEVKVAISPVSEANAIANLDQDGAGWDFDARRAEAKAAWDQ
ALAVVDVDAPKTAKTQFYTALYHAMLSPTLSMDANGDYRGPDHAVHRAEGFDFYSTWSLW
DVYRAQQPLMVLLHPERSTDFIRSLIAARAASPFGILPVWAYQGLETWCMIGYHAVPVIA
DAYVKGVRGFDAGKALEAMVASATYAPYGDLADYMKLGYVPIDKEPEGASKTLEYAYDDW
SLAQMAKGMGRSDVAAAFGRRAGNWKNTWDPQSGFMRARLSDGKFREPFDPEAAGYGSDY
TEGNAWQYSWYVPQDVAGLIGAMGGDAKFVARLDALFEAKVDPSHFKHVEDITGLIGWYA
HGNEPSHHIAYLYDYAGAPWKTQARLKQIMDSQYAPRPDGLSGNDDLGQMSAWYVFTALG
VYPVTPGSDEYAIGRPFVARAALHLGHGRTFTISASPLDDAHPYVGAVTLNGRPLQRSYL
RHGEIVAGGELHFTMQAQPNREWGSAASARPAAMSRYGR