Protein Info for LRK54_RS04435 in Rhodanobacter denitrificans FW104-10B01

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 413 transmembrane" amino acids 20 to 40 (21 residues), see Phobius details amino acids 288 to 315 (28 residues), see Phobius details amino acids 335 to 364 (30 residues), see Phobius details amino acids 376 to 397 (22 residues), see Phobius details PF12704: MacB_PCD" amino acids 27 to 252 (226 residues), 44.4 bits, see alignment E=2.5e-15 PF02687: FtsX" amino acids 294 to 406 (113 residues), 60.9 bits, see alignment E=1.2e-20

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (413 amino acids)

>LRK54_RS04435 ABC transporter permease (Rhodanobacter denitrificans FW104-10B01)
MHIQIRPVITALRRHKAGTLLIALQIALTLAIVCNALFIIHQRLANLSATSGVDEANVFV
IANMWADLGQPTERIDVQVRADLLALRQLPAVRDATPASGYPLRGGGWDNFITMTPEQVK
PTTDAAVYTGDEHFIDALGLRLVAGRNFRPDEVMVMGTQQAITPPTAIVSKALADRLFPN
GNALGKSFYAMGATPSTIVGIVDPLHRQGVDQWSNGYAGQALLWPLRADDARGVYYIVRA
KPGRLADAMREAPKALYAQSRLRIIDPKDGVQDYAAIRHKVYDRDRGMAILMGIICAVLL
AITAAGIVGLTSFWVGQRRKQIGVRRALGARQRDILAYFLTENFLISATGVLLGAVLAIA
FNLWTVTRFEMSHMSMAYVGIGVVVLLLLGQAAVLAPALRASRVSPVEATRSV