Protein Info for LRK54_RS04175 in Rhodanobacter denitrificans FW104-10B01

Annotation: Hpt domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1800 1900 1992 transmembrane" amino acids 1813 to 1835 (23 residues), see Phobius details PF01627: Hpt" amino acids 12 to 110 (99 residues), 24.7 bits, see alignment 5.9e-09 amino acids 689 to 781 (93 residues), 45.3 bits, see alignment 2.2e-15 amino acids 880 to 968 (89 residues), 42.3 bits, see alignment (E = 1.8e-14) amino acids 1208 to 1305 (98 residues), 49 bits, see alignment 1.4e-16 PF02518: HATPase_c" amino acids 1565 to 1700 (136 residues), 62.2 bits, see alignment 1.5e-20 PF01584: CheW" amino acids 1705 to 1837 (133 residues), 80.9 bits, see alignment 1.7e-26 PF00072: Response_reg" amino acids 1867 to 1977 (111 residues), 97.7 bits, see alignment 1.2e-31

Best Hits

Predicted SEED Role

"Signal transduction histidine kinase CheA (EC 2.7.3.-)" in subsystem Bacterial Chemotaxis or Flagellar motility or Two-component regulatory systems in Campylobacter (EC 2.7.3.-)

Isozymes

Compare fitness of predicted isozymes for: 2.7.3.-

Use Curated BLAST to search for 2.7.3.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1992 amino acids)

>LRK54_RS04175 Hpt domain-containing protein (Rhodanobacter denitrificans FW104-10B01)
MRLQDHIDFTTLQWVKPELDDTLSIAREALESYVDNPGKRDYMRTCADHLHQVQGTLRMV
ELYGAAMVTAEMEALAIALLGDHVTYREEAYAALMRGLMQLPDYLERLSSGHRDVPVVLL
PLLNDLRASREQEPLPESAMFHPNLDAFLPEQAPAAMSEAYAEAHRGELVDLRLRFQQQL
LGWFRGQNAAQQLVNMRKTLLAITARCHHVHGRRLWWIAAGVLEGLEQGALKGQAGEIRQ
LIGKVDRHIRLLIEQGEDSLRGGEADDVACKLLYIVAQAKQRSPQMELLRGTYALDGLLP
DAGELEHARGSMAGHNRALLDSVSRALKDDLLRVKEALDLFLRQQNGDPAQLAAQGEVLE
RVGDTLGMLALAVPRRVVTEQRRVLDEIANRMRAADEETLLDVAGALLYVEASLDDHIES
LGSEEEAGTNDAMPSLPRSEALGVVTTLMQEAIANTGRVKDAIVAFVESGWEHDRLAGAP
ALMEEVAGAMHMLSSPRPAELAQGVGRFIGNELLDDRRVPSGAQMDQLADALAALEYYLE
AAREHRGGLEHILDVAEHSLGLLGYWPLPSARAASAAPTAPEAAPVESAAAGEQHPELSE
SVSLLPGEDLGQLFVGDSHTPAAPTHDLDGLRLAQTETTAPTALDHSAADASGEDWIEIE
EEVVEQVPVRDALAANTSFNVNAEGIDDDIREIFLEEMQEEIDNLRSAEKLWLADPAQIS
SLVGIRRSFHTLKGSGRLVGAGVLGEFAWKVEDMLNRVLDNTIQPDDNAQALVRHAIDAL
PQLLAALKGEGAPGAPLGAIMHTAEQLAAGNPARVEDHAPRAMETVRRVVRRRVPRIDTA
AEAIPTAGLTDASAASVTPEPAESVQAMAMPVMPPVDPVLLEILRSEVAQYLQTIRAAIQ
RSDDELPIGEELLRAVHTLHGAIAMVDIPLLTQLLSPLEGLFKRLRAANLPLSSEGLRLL
GQAVDAVDHVMGQFDAVEPQLPDADALTAQITRMRDRYPESKVAHVVFEPQAEEAESAET
TDTMDNVDAEQAIMADSLEAGMAEVAAARNETASADVPADTDEMSDIHPDDARHAELTAE
LVAALGAFEPEQTVAEKLAAEQAAAAQVAAEKLAAEQAAAAQVAAEKLAAEQAAAAQVAA
EKLAAEQAAAAQVAAEKLAAEQAVAAQAAAEKLAAEQAAASRATEEADAATPPEPTYALA
GSGQIDADLLEVFIDEAREILDHADDVLAQWHAEPAELAHVPELQRDLHTLKGGARIAGL
AAMGDLSHAIETLLEKPIRDTSKTGSLIAALEASFDQLHALVQQVAQDRAIDYPRAMIDQ
LLALAGETTLADDLVPMAAAMPAPVAAAPSPAVPAAGELGLPELMPETEEEVRSSQEQIR
VRADLLDNLVSHAGEVAIYRSRLEQQVAGYRFNLVELEQTVARLRSQLRMLEIETEAQII
ARFQREHREAGMAAFDPLELDRYSQLQQYSRALAESVSDLVSIQNMLDELTRQAETLLIQ
QSRVSTELQDGLLRTRMLPFDTMVPNLRRTLRQAAQEQGKHAQLHVDGAHGEMDRNLLDR
IKAPFEHMLRNAIAHGIETPAERRKAGKPVEGAVNITVAREATEVVIRVSDDGRGLNREA
IRKRGVERGLLRAETRPTDNQLLSLITQTGFSTASQVTQLAGRGVGMDVVANEIKQLGGS
LSIESEEGKGTTFVLRLPFTLAVTQAILVRIGEATFAIPMTSVQGVARVNPDDLTALMAE
DEPSFQYGNEAYGIHDLAELLGLPPGLPTEDEQQPLLLTRAGDLRAAIRIDAVLGSREIV
VKSVGPQISSVPGLLGATIMGDGSVLIILDLAPLVRHGMIRREQRLAEGLSAVQAPVVEE
VATKPLVMVVDDSITMRKVTSRVLERHEYEVSTAKDGVDALEKLHERVPDLMLLDIEMPR
MDGYELATHMKADPRLREVPIIMITSRSGDKHRQRAFDIGVDRYLGKPYQEAELLVQIGE
VLEQRAVEPVHD