Protein Info for LRK54_RS04000 in Rhodanobacter denitrificans FW104-10B01

Annotation: prolyl oligopeptidase family serine peptidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 663 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF02129: Peptidase_S15" amino acids 413 to 553 (141 residues), 46.6 bits, see alignment E=1.7e-15 PF00756: Esterase" amino acids 421 to 546 (126 residues), 24.6 bits, see alignment E=8.8e-09 PF20434: BD-FAE" amino acids 423 to 618 (196 residues), 49.8 bits, see alignment E=1.5e-16 PF00326: Peptidase_S9" amino acids 455 to 660 (206 residues), 165.5 bits, see alignment E=5.5e-52 PF01738: DLH" amino acids 457 to 643 (187 residues), 30.5 bits, see alignment E=1.2e-10 PF08386: Abhydrolase_4" amino acids 592 to 655 (64 residues), 27.2 bits, see alignment E=1.6e-09

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (663 amino acids)

>LRK54_RS04000 prolyl oligopeptidase family serine peptidase (Rhodanobacter denitrificans FW104-10B01)
MIIKHIHRLILCAAFVLLAPVAAHTSEIPYRDFARHPPLTHPVISPDGKHLAVSVHNEDG
SYQLGVLALPDLKPVSRLNMAPRTLPIGITWVSNTRLVMGLGEESGTLEAPQGTGEVVAV
DFDGSHKRVLYSWRVRDTKGTNMNILSMVRGAGFIAGTPHQLNGHVYISVSPFRTHASSG
SRDSGQSLIYDVETDSGHATLMGRIDEAGMSFVLHDDVARFAYGSNQDDPYRIDVYRREN
ADSPWQKLPASITGKHLVPIHISADGKHLYSLYSADGGPDQLVVSNLDGSARKVLVGDDF
AAVDDVLWTPYPYQPYGVVFGAGKPRIQYLDDSIYTQISQALAAKFPDEFLTVASASQDG
MQLIIGAHSDRDPGTYALFDRSSMNLQPLFRSQPWIDPQQMVPRQPINFTASDGTRLAGF
LTMPANSAGKPMPLVLLPHGGPIGVADSWGYDPWSQFLANRGYAVLQVNYRGSGGRGTDF
EHSGYKQFGSGIQQDLIDGVNWAIRQGYADARRVCVFGASFGGYSSLMAPIRAPGMFKCA
VDYAGVSDYAIELHRSDTRRSAGGRNYFMQAIGTDDDTIRAISPIYHLDKFNIPVLIIHG
KDDPRVPYENATELRAALDKAGKPYEWLVRDKEQHGFYSEENNIAFYEALQAFLDRHIGK
GAH