Protein Info for LRK54_RS03910 in Rhodanobacter denitrificans FW104-10B01

Annotation: glycosyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 299 transmembrane" amino acids 248 to 264 (17 residues), see Phobius details PF13641: Glyco_tranf_2_3" amino acids 18 to 217 (200 residues), 32.8 bits, see alignment E=3.4e-12

Best Hits

KEGG orthology group: None (inferred from 51% identity to pfv:Psefu_3785)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (299 amino acids)

>LRK54_RS03910 glycosyltransferase (Rhodanobacter denitrificans FW104-10B01)
MTSSSDVVALVLHFRTPQATLACLDALHAEGVRRAVVVDNSEDAGRSVGAMATGIARLEA
TGFVMEWLSPERNLGFAAGVNHGLRHIRSQRHSPVLLINSDARLAAGAMQRLASCLCDAP
LAVPTVVEDGPQHMTRPLIGYYQRVFALYLRHAHAGTVEYPSGCCLLLGADTDYEGLFDE
DFFFYGEDVMLGACLAQRGLRATWVQDALVQHATSTSARNGSLFYEYHMVRGHWLLARKL
AHNRRERVLFLLARCCSLPMRAFIRSVRLHSLWPWQGLWMATVDVLLNRFRDLTPACKR