Protein Info for LRK54_RS03885 in Rhodanobacter denitrificans FW104-10B01

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 670 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details transmembrane" amino acids 94 to 114 (21 residues), see Phobius details amino acids 125 to 145 (21 residues), see Phobius details amino acids 151 to 168 (18 residues), see Phobius details amino acids 179 to 197 (19 residues), see Phobius details amino acids 203 to 222 (20 residues), see Phobius details amino acids 234 to 253 (20 residues), see Phobius details amino acids 311 to 331 (21 residues), see Phobius details amino acids 339 to 357 (19 residues), see Phobius details amino acids 369 to 385 (17 residues), see Phobius details amino acids 392 to 410 (19 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (670 amino acids)

>LRK54_RS03885 hypothetical protein (Rhodanobacter denitrificans FW104-10B01)
MHRRFLAPSLLLLLGLGLTWVAYSPGLHGGFLFDDFANLPALGVTGPTDDWLAFLRYITS
GTADPTGRPLTLLTFLLDAQNWPASPFPFKRTNLIFHLINGILLYALLAQLGRLLGHDER
QSRTAALLGTALWLLHPLLVSTTLYIVQREAMLPATCTLVGLLLWLHGRQLLTQGKTAAG
MAWSVLGLGGFTLLGMLAKANGVLLPIFALLIEAVVLAPRHPVQHGRARQTHRLALLACG
TAPSLIILGYLSWTGLHSVLAGGPVGFRPWSIGQRLLTEPRVLLDYLQLLWLPRPFSSGL
FNDQYVASTSWLQPITTLPAILAVFVLIGLAWRQRRRYPALALTMLFYFAGQLLESTSIP
LELYFEHRNYLPALLMFWPLGLWLADIRSLRLLKVALMLVLPLGLAWMTHARAELWGNVH
SQALLWAKINPDSARAQTNAAQIEMQAGQPQAAIQRLEKLLVGQPSQVQLAFNLIGARCM
VGGITATDLAAAKLAMQGTPNTGTLFTHWFERTLPVTISGECPGLTLQGLLELIDTGLEN
PKLSAAGPRQDLTYLRGKIALAQGRPDAALADFTRALDLQVRPGIALEAAATLGAAGYPS
HGLRLLDHYEAVSGNVTKPGFGMPWLHAWVLEHQHYWPHELDHLRRQLALDARAGSMNTS
RHTSPAGTPD