Protein Info for LRK54_RS03075 in Rhodanobacter denitrificans FW104-10B01

Annotation: acyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 304 transmembrane" amino acids 12 to 39 (28 residues), see Phobius details amino acids 51 to 71 (21 residues), see Phobius details amino acids 121 to 140 (20 residues), see Phobius details PF01553: Acyltransferase" amino acids 76 to 226 (151 residues), 58.4 bits, see alignment E=3.4e-20

Best Hits

KEGG orthology group: None (inferred from 60% identity to psu:Psesu_1421)

Predicted SEED Role

"Acyltransferase family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (304 amino acids)

>LRK54_RS03075 acyltransferase (Rhodanobacter denitrificans FW104-10B01)
MLAKLPGPIRIPLALLLLAANILLHVLPLFALSLVKVVVPVHGIRLACSRMLVAIAESWI
GVNNFLFGLFTRIRWQVEGLAGLRRDGNYLVLCNHQSWVDIPVLQKVFNRRVPFMRFFLK
QQLIWVPLLGPAWWALDFPFMKRYSRETLLRHPELQGRDREATRQACAKFRHMPVSVMNF
VEGTRFTPAKHDAQSSPYRHLLRPKAGGLAFVLDAMGDALHATLDVTIVYPEGRGTMMDL
IAGRVHDIRVHVRELPIDATLVGSYDDDAAFRGRVKLWVNALWREKDARVAQMLMAADAA
PMGE