Protein Info for LRK54_RS02895 in Rhodanobacter denitrificans FW104-10B01

Annotation: rhomboid family intramembrane serine protease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 205 transmembrane" amino acids 12 to 36 (25 residues), see Phobius details amino acids 49 to 73 (25 residues), see Phobius details amino acids 85 to 107 (23 residues), see Phobius details amino acids 113 to 133 (21 residues), see Phobius details amino acids 140 to 159 (20 residues), see Phobius details amino acids 171 to 191 (21 residues), see Phobius details PF01694: Rhomboid" amino acids 44 to 193 (150 residues), 124.5 bits, see alignment E=3.9e-40 PF08551: DUF1751" amino acids 46 to 107 (62 residues), 35.1 bits, see alignment E=1.7e-12

Best Hits

KEGG orthology group: None (inferred from 56% identity to xal:XALc_2443)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (205 amino acids)

>LRK54_RS02895 rhomboid family intramembrane serine protease (Rhodanobacter denitrificans FW104-10B01)
MPLDLPPVTRNLLIANVAVFFLQFVAGQFLLLHFALWPLGSGLFEVWQIVTSAFMHGGVT
HIMFNMLALYMFGGTIERTFGAREFTVYYFVCAIVASLLQLAVLWFFPPAQYGPTLGASG
AIFGLLLAFGMLYPHEKVMLIFLPIPMPAWLFVILYAAAELTMGVTGIEPGVAHFAHLGG
MLGGLVLIQYWRGRLPWKPRRRLLR