Protein Info for LRK54_RS02885 in Rhodanobacter denitrificans FW104-10B01

Annotation: RNA polymerase-associated protein RapA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 946 PF18339: Tudor_1_RapA" amino acids 2 to 51 (50 residues), 66.3 bits, see alignment 5.5e-22 PF18337: Tudor_RapA" amino acids 54 to 109 (56 residues), 31.1 bits, see alignment 6.6e-11 PF04851: ResIII" amino acids 159 to 310 (152 residues), 37.4 bits, see alignment E=7.6e-13 PF00176: SNF2-rel_dom" amino acids 164 to 338 (175 residues), 40 bits, see alignment E=7.8e-14 PF00271: Helicase_C" amino acids 465 to 574 (110 residues), 52.4 bits, see alignment E=1.8e-17 PF12137: RapA_C" amino acids 578 to 938 (361 residues), 302.8 bits, see alignment E=1e-93

Best Hits

Predicted SEED Role

"RNA polymerase associated protein RapA (EC 3.6.1.-)" (EC 3.6.1.-)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.6.1.-

Use Curated BLAST to search for 3.6.1.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (946 amino acids)

>LRK54_RS02885 RNA polymerase-associated protein RapA (Rhodanobacter denitrificans FW104-10B01)
MFVPGQRWISSAEPELGLGTVLRVEGRGVQVLFAKAGVLRPYAVDSAPLLRAEFRAGQRV
AGKGIAFLVERVEIKDELLIYRGEGRELHEGQLDDEQSVSQADDRLIGGRTDAVAQFELR
LEGLKRRAEARRSPMWGLGAARIGLVPHQLRVAGIAAARRPPRVLLADEVGLGKTIEAGM
IIARQLAAGRASRVLLLLPDTLVYQWFVEMLRRFNLSFAIYDEERCEALEQSGDADNPFE
DEQLVIADFGFLESSPKYARQLLDAPWDLLVVDEAHHLAWSPEAASPRYTMVEQLAAAIP
GVVLLTATPEQLGRSGHFARLRLLDPQRYHDLDGYLAEADSYLALSKIADRLQDGQPLDD
AQRAALAEAFHGDQALTARLADPTKADNARELLAALIDRHGTGRAMFRNNRAGVGGFPQR
RPEWHLLPMTTLDDSARQALLAEFHADIQQPPALIEVDYAADPRIDALVALLDAHPQDKF
LLICRSQAKVLALEEALRTRSGVGVARFHEGLGIVQRDRNAAYFAQPDGARLLLCSEIGS
EGRNFQFAHRLVLWDLPLDPDLLEQRIGRLDRIGQQHDIAIHILAVADSAQHVLARWYDE
GVDAFRSSPADGRELLRRYGEPLTRLADEHARGDDNRDQELDALLAETRASHEQMAALIR
GGRDRLLELAASRDLHADELQQAFAREDRDPGRDAFVQRLLEAFGIHAEELGGQVLLLDP
QYLSTDALPGFAEGPQSVTFAREVALAREELPLLRLDHPLVAGALDLALSGEQGNAAFMV
DDVLPPRTALLQAVFLLECVAERKLDAERFLPVLPIAVTVDTRLAERADFAPSEVALRKA
GDRNIEVPRYRKFLAKLVPPMLERAEALAGTRGQTRIDEAVALATAALDAELSRLLALRA
VNPSVSEAEIAAIAAERAALLAALPQSRLRLDAVRFVVSADFLALR