Protein Info for LRK54_RS02800 in Rhodanobacter denitrificans FW104-10B01

Annotation: paraquat-inducible protein A

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 205 transmembrane" amino acids 46 to 70 (25 residues), see Phobius details amino acids 98 to 123 (26 residues), see Phobius details amino acids 143 to 163 (21 residues), see Phobius details amino acids 175 to 193 (19 residues), see Phobius details PF04403: PqiA" amino acids 48 to 200 (153 residues), 140.3 bits, see alignment E=2.4e-45

Best Hits

KEGG orthology group: K03808, paraquat-inducible protein A (inferred from 43% identity to ppf:Pput_3141)

Predicted SEED Role

"Paraquat-inducible protein A" in subsystem Oxidative stress

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (205 amino acids)

>LRK54_RS02800 paraquat-inducible protein A (Rhodanobacter denitrificans FW104-10B01)
MGTSSPETLLVCEHCDTVYRRRSLARGEVATCARCGAELERHHALSVNAMLALILTAMIV
FVQANMWPIVTLGLSGQQSSTTLWGVILAMWREEAKVVSVLVAATLFFFPLLKMLLLGWL
LWFGKAGRRAPGFVPLMVVLHRLGPWTMSEVFVLGALVAIVKAHTYFDVTPDPGIYAYAA
LTLLITIFAGVDLRQLWDQVPEHAA