Protein Info for LRK54_RS02795 in Rhodanobacter denitrificans FW104-10B01

Annotation: paraquat-inducible protein A

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 217 transmembrane" amino acids 58 to 79 (22 residues), see Phobius details amino acids 108 to 133 (26 residues), see Phobius details amino acids 154 to 176 (23 residues), see Phobius details amino acids 184 to 204 (21 residues), see Phobius details PF04403: PqiA" amino acids 59 to 211 (153 residues), 170.4 bits, see alignment E=1.3e-54

Best Hits

KEGG orthology group: K03808, paraquat-inducible protein A (inferred from 56% identity to pba:PSEBR_a1882)

Predicted SEED Role

"Paraquat-inducible protein A" in subsystem Oxidative stress

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (217 amino acids)

>LRK54_RS02795 paraquat-inducible protein A (Rhodanobacter denitrificans FW104-10B01)
MSALPRAAELGLIACTVCGQVCRNVPGDPQLDGDGVDDAMACPRCGSTLRRRKPHSYAHT
WALLIAAFLLYIPANVLPIMRTASLNDVDDNTIISGVVELWVKGSPNLAIIVFTASIVVP
VLKFLALGTLLVSSQQGSDWARPQRARLYRLVELIGYWSMLDVFVVALLTALVRFSVLSL
VEPLPGVIFFGLTVVLTMLASMSFDPRLIWDGKDTDD